Gene Information

Name : CDCO157_4298 (CDCO157_4298)
Accession : YP_006315164.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : T3SS secreted effector EspH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4530470 - 4530976 bp
Length : 507 bp
Strand : -
Note : -

DNA sequence :
ATGTCGTTATCAGGAGCGGTATTCAAGACATTTCTGACAAGTGAACATGCGTCATGGAACAGGTTCAACAGAAGGCTTCA
TATACCCAATGAAGATATCGTAGATGAAATTCAGCTTAAAGCCCGAATGCAACAACGCCATCATCGGGTATATCCAGAAA
TAGGGGATTCCACCATTGTCTCTTTTAGAGGCAAAGACTATGCTGTTCACTTTATTAAAGATGGCCCAAAAGATGATTAT
GTGTACAAAGTACAAAGAATAACACCGGAAAATGGATGTTTCTCAACGCTATTTAGCGTGTTTTCTGGCGGTGTGACTAA
GGCTTTGGAAAGAAAATTAAATGAGAGACATATAACTCCACTTTCTTCAACCTGGTTTCCTCGTACTCCCCTGGAGGGGA
TCTTAGCTGAAAGAGGATTATCTTCTTTGTTACGTCGTGTACAGTCTACCGAACGTCTTGATAATAGGGCTATAGCAACA
AGAGCTTCCTCTTATAGCGTATTATGA

Protein sequence :
MSLSGAVFKTFLTSEHASWNRFNRRLHIPNEDIVDEIQLKARMQQRHHRVYPEIGDSTIVSFRGKDYAVHFIKDGPKDDY
VYKVQRITPENGCFSTLFSVFSGGVTKALERKLNERHITPLSSTWFPRTPLEGILAERGLSSLLRRVQSTERLDNRAIAT
RASSYSVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ACU09454.1 hypothetical protein Not tested LEE Protein 2e-76 100
ECs4564 NP_312591.1 hypothetical protein Not tested LEE Protein 3e-76 100
unnamed AAC31509.1 L0030 Not tested LEE Protein 2e-76 100
Z5115 NP_290264.1 hypothetical protein Not tested LEE Protein 3e-76 100
unnamed CAI43870.1 hypothetical protein Not tested LEE Protein 1e-52 74
unnamed AAK26719.1 unknown Not tested LEE Protein 1e-53 74
unnamed AAL57546.1 unknown Not tested LEE Protein 1e-53 74
espH YP_003223471.1 T3SS effector EspH Virulence LEE Protein 2e-52 74
st28 CAC81866.1 ST28 protein Not tested LEE II Protein 1e-53 74
espH YP_003232157.1 T3SS effector EspH Virulence LEE Protein 2e-53 74
unnamed AAC38387.1 Orf18 Not tested LEE Protein 3e-50 72
unnamed AAL06373.1 unknown Not tested LEE Protein 4e-52 70
espH YP_003236084.1 T3SS secreted effector EspH Virulence LEE Protein 2e-51 68

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_4298 YP_006315164.1 T3SS secreted effector EspH VFG0808 Protein 1e-76 100
CDCO157_4298 YP_006315164.1 T3SS secreted effector EspH VFG0734 Protein 1e-50 72