Gene Information

Name : CDCO157_4284 (CDCO157_4284)
Accession : YP_006315150.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : protein EspF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4516515 - 4516979 bp
Length : 465 bp
Strand : -
Note : -

DNA sequence : 
ATGCTTAATGGAATTAGTAACGCTGCTTCTACACTAGGGCGGCAGCTTGTAGGTATCGCAAGTCGAGTGAGCTCTGCGGG
GGGAACTGGATTTTCTGTAGCCCCTCAGGCCGTGCGTCTTACTCCGGTGAAAGTTCATTCCCCTTTTTCTCCAGGCTCGT
CGAATGTTAATGCGAGAACGATTTTTAATGTGAGCAGCCAGGTGACTTCATTTACTCCCTCTCGTCCGGCACCGCCGCCA
CCGACAAGTGGACAGGCATCCGGGGCATCCCGACCTTTACCGCCCATTGCACAGGCATTAAAAGAGCACTTGGCTGCCTA
TGAAAAATCGAAAGGTCCTGAGGCTTTAGGTTTTAAGCCCGCCCGTCAGGCACCACCGCCACCGACAGGGCCTAGTGGAC
TACCGCCCCTTGCACAGGCATTAAAAGATCATTTAGCTGCCTATGAGCAATCGAAGAAAGGGTAA

Protein sequence : 
MLNGISNAASTLGRQLVGIASRVSSAGGTGFSVAPQAVRLTPVKVHSPFSPGSSNVNARTIFNVSSQVTSFTPSRPAPPP
PTSGQASGASRPLPPIAQALKEHLAAYEKSKGPEALGFKPARQAPPPPTGPSGLPPLAQALKDHLAAYEQSKKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
espF AAC38400.1 EspF Virulence LEE Protein 1e-36 85
espF AAL57560.1 EspF Virulence LEE Protein 4e-30 72
espF AAK26733.1 EspF Virulence LEE Protein 4e-30 72
espF YP_003232171.1 T3SS effector EspF Virulence LEE Protein 5e-29 72
espF AAL60256.1 EspF Virulence LEE Protein 3e-29 72
espF CAC81880.1 EspF protein Virulence LEE II Protein 3e-29 72
unnamed AAC28567.1 unknown protein Not tested LEE Protein 3e-30 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_4284 YP_006315150.1 protein EspF VFG0748 Protein 5e-37 85