Gene Information

Name : CDCO157_3650 (CDCO157_3650)
Accession : YP_006314516.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3836616 - 3837275 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGAGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Protein sequence : 
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-40 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 2e-40 44
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 3e-31 44
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 5e-37 43
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 4e-34 43
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 4e-31 41
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 2e-36 41
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 6e-36 41
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 2e-40 47
CDCO157_3650 YP_006314516.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 3e-32 42