Gene Information

Name : spaP (CDCO157_3478)
Accession : YP_006314345.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : surface presentation of antigens protein SpaP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3652455 - 3653120 bp
Length : 666 bp
Strand : -
Note : -

DNA sequence : 
ATGTCAAATAGCATTTCGCTGATAGCGATACTATCATTATTTACACTATTGCCGTTTATAATAGCATCCGGGACATGTTT
TATTAAATTCTCGATTGTTTTTGTTATTGTCCGAAACGCATTGGGACTTCAGCAAGTGCCATCAAATATGACACTTAATG
GGGTTGCTTTGCTATTGTCAATGTTTGTAATGATGCCGGTTGGGAAGGAAATATATTATAACAGTCAGAATGAGAATCTT
TCATTCAATAATGTAGCGTCGGTTGTTAATTTTGTTGAGACAGGCATGAGTGGTTATAAATCATATTTGATAAAATATTC
TGAACCGGAGTTGGTTAGCTTTTTTGAAAAGATTCAGAAGGTGAATAGTTCTGAAGACAATGAAGAGATAATCGATGATG
ATAATATTTCAATTTTCTCGTTACTCCCGGCATATGCGTTAAGTGAGATAAAAAGTGCATTTATTATAGGTTTTTATATC
TATTTACCCTTTGTTGTAGTGGATCTGGTTATATCCAGCGTTCTGTTAACGTTAGGTATGATGATGATGAGTCCGGTAAC
CATATCTACACCGATAAAATTAATTCTGTTTGTCGCGATGGACGGTTGGACAATGTTATCAAAAGGACTCATATTACAAT
ATTTTGACCTATCCATTAATCCCTGA

Protein sequence : 
MSNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVGKEIYYNSQNENL
SFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYI
YLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQYFDLSINP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 3e-67 100
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 3e-65 99
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-48 67
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-48 67
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-49 67
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-49 67
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-48 59
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-41 57
escR AAK26700.1 EscR Virulence LEE Protein 3e-26 43
escR AAL57527.1 EscR Virulence LEE Protein 3e-26 43
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 4e-26 43
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-26 43
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 4e-26 43
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-26 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-25 42
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-26 42
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-26 42
escR AAC38369.1 EscR Virulence LEE Protein 1e-25 42
escR AAC31528.1 L0049 Virulence LEE Protein 3e-26 42
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-26 42
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-26 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-23 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-23 42
unnamed AAL06354.1 EscR Virulence LEE Protein 9e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG0551 Protein 2e-49 67
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG2455 Protein 2e-47 62
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG1773 Protein 2e-48 62
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG1012 Protein 4e-43 59
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG0394 Protein 1e-26 45
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG0188 Protein 5e-27 44
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG0827 Protein 1e-26 42
spaP YP_006314345.1 surface presentation of antigens protein SpaP VFG0715 Protein 7e-26 42