Gene Information

Name : CDCO157_1702 (CDCO157_1702)
Accession : YP_006312569.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : putative colonization factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1770158 - 1770916 bp
Length : 759 bp
Strand : +
Note : -

DNA sequence : 
ATGAGGAACATAATGGCAGGTTTTTTAATATTCCTGTCTTCTGCTGCTTATGCTGATATCAATCTGTATGGTCCTGGTGG
CCCGCATACAGCCTTGCTTGATGCAGCCAAACTTTATGCCGAAAAAACAGGTATTATAGTGAACGTTCATTACGGCCCAC
AGAACAAATGGAATGAAGATGCCAAAAAAAATGCAGATATCTTGTTTGGCGCATCAGAACAATCTGCTCTGGCTATCATT
CGGGACCATAAAGACAGCTTCAGTGAAAAAGATATTCAGCCTCTTTATCTGCGAAAAAGTATTTTACTGGTAAAGAAAGG
TAATCCTAAAAATATCCGGAGTATTGACGACCTGACCAGACCTGGGATTGGCGTAATTGTTAATGATGGTGGTGGTACCA
GTAATACATCAGGCACTGGCGTCTGGGAAGATATTGCCGGACGTAAAGGGAATATAGAAACTGTCGCCGCAATCCGAAAA
AATATTATTTTATATGCGCCCAATAGCGGAACTGCACGTAAGGCTCTTGAGAATCAGCCTGGAGCAGATGTCTGGATAAC
CTGGGCTGACTGGGCAGCCAGTAATCCAGAAATTGGTGATGTCGTGGAAATAGCGCCAGACTACGTGATATGGCGTGATA
TGAACATTACAGTACGTCAGGATGCAAATGATGAAACCCGTCGATTTGCAGAATGGCTACAAACCGATGAAGCGGCGCCT
GCATTCAAAAAATATGGCTGGACCAGGAAAGGCACTTGA

Protein sequence : 
MRNIMAGFLIFLSSAAYADINLYGPGGPHTALLDAAKLYAEKTGIIVNVHYGPQNKWNEDAKKNADILFGASEQSALAII
RDHKDSFSEKDIQPLYLRKSILLVKKGNPKNIRSIDDLTRPGIGVIVNDGGGTSNTSGTGVWEDIAGRKGNIETVAAIRK
NIILYAPNSGTARKALENQPGADVWITWADWAASNPEIGDVVEIAPDYVIWRDMNITVRQDANDETRRFAEWLQTDEAAP
AFKKYGWTRKGT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 1e-55 50
acfC AAA82706.1 AcfC Virulence VPI Protein 1e-55 50
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 1e-55 50
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 2e-55 50
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 2e-55 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_1702 YP_006312569.1 putative colonization factor VFG0839 Protein 2e-107 100
CDCO157_1702 YP_006312569.1 putative colonization factor VFG0105 Protein 8e-56 50