Gene Information

Name : CDCO157_1342 (CDCO157_1342)
Accession : YP_006312213.1
Strain : Escherichia coli Xuzhou21
Genome accession: NC_017906
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1456494 - 1456868 bp
Length : 375 bp
Strand : +
Note : -

DNA sequence :
ATGAAAACATTATCCGACACACATGTACGGGAGGTATCTCGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAT
CCGACTGCTGGACCAGCATTATGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTTAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACCTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA

Protein sequence :
MKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08478.1 unknown Not tested SRL Protein 2e-54 99
z5091 CAD33789.1 Z5091 protein Not tested PAI I 536 Protein 8e-53 96
unnamed ACU09433.1 conserved hypothetical protein Not tested LEE Protein 1e-51 94
Z5091 NP_290242.1 hypothetical protein Not tested LEE Protein 2e-51 94
ECs4539 NP_312566.1 hypothetical protein Not tested LEE Protein 2e-51 94
unnamed CAI43848.1 hypothetical protein Not tested LEE Protein 2e-51 94
aec76 AAW51759.1 Aec76 Not tested AGI-3 Protein 2e-51 94
unnamed AAC31486.1 L0007 Not tested LEE Protein 1e-51 94
yeeV ADD91699.1 YeeV Not tested PAI-I AL862 Protein 5e-51 93
unnamed CAD66207.1 hypothetical protein Not tested PAI III 536 Protein 8e-50 93
unnamed AAL57575.1 unknown Not tested LEE Protein 2e-50 92
c5149 NP_756997.1 hypothetical protein Not tested PAI II CFT073 Protein 1e-50 92
yeeV CAE85204.1 YeeV protein Not tested PAI V 536 Protein 1e-50 92
unnamed AAL67389.1 L0007-like protein Not tested PAI II CFT073 Protein 8e-51 92
yeeV NP_708773.1 hypothetical protein Not tested SHI-1 Protein 2e-48 91
unnamed CAD42101.1 hypothetical protein Not tested PAI II 536 Protein 2e-50 91
unnamed AAK00482.1 unknown Not tested SHI-1 Protein 1e-48 91
yeeV NP_838487.1 hypothetical protein Not tested SHI-1 Protein 2e-48 91
ECO103_3592 YP_003223449.1 hypothetical protein Not tested LEE Protein 4e-48 90
yeeV YP_854325.1 hypothetical protein Not tested PAI I APEC-O1 Protein 3e-48 90
yeeV AAZ04461.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 4e-47 90
unnamed AAL67342.1 intergenic-region protein Not tested PAI II CFT073 Protein 8e-49 89

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CDCO157_1342 YP_006312213.1 hypothetical protein VFG1069 Protein 7e-55 99
CDCO157_1342 YP_006312213.1 hypothetical protein VFG1530 Protein 3e-53 96
CDCO157_1342 YP_006312213.1 hypothetical protein VFG0786 Protein 5e-52 94
CDCO157_1342 YP_006312213.1 hypothetical protein VFG1682 Protein 3e-50 93
CDCO157_1342 YP_006312213.1 hypothetical protein VFG0663 Protein 5e-49 91
CDCO157_1342 YP_006312213.1 hypothetical protein VFG1620 Protein 7e-51 91