Gene Information

Name : clpC (Spaf_1985)
Accession : YP_006310743.1
Strain : Streptococcus parasanguinis FW213
Genome accession: NC_017905
Putative virulence/resistance : Virulence
Product : ATP-dependent Clp protease, ATP-binding subunit
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2029360 - 2031789 bp
Length : 2430 bp
Strand : -
Note : -

DNA sequence :
ATGAACTATTCAACAGCACTGTTAGAAAGTATAGAAGCGGCCCAAATACTAGCAGGCCACTATCAGGGGCATACCTTAGA
TACTTGGCATCTCCTGACGGCTATGGCCAATAATCCCTATAGCGTGGCAGGTTCTGTACTGAACGATTATCCTATGCAGA
TCGATGAGTTTCAGGATGCAGCGGAGCATATTACAGGTCAAGCTTTTCAAAGCGACAATCGGTATGAAATCTTCCCATTT
TCTTATCGGATGGAAGCGATTATGAAGCACGCAAGAGAGATTGCCCAGGTTCTTCATGCCAAGACCTTGGGAACAGAGCA
TGTGCTCCTCTCTCTTCTAGCAGACCGTGGGACCTTGGCTAGCCAAGTCATGGAGTTTGCCGGCTTTGCCTTTACAGAGC
AAGACAAGGGAGTTCCTATTGCCTCCCTTCGCAAGAATTTAGAAGACAAGGCAGGCTGGGACAAGAATGATATCAAAGCC
ATTCGGAGTCTTTATCGGGCTCAAAACCCTAACCGCCAAACCATGGGAAATATGATGGGCATGCCCCCAAGCACCAGTGG
AGGTCTTGAAGATTATACCCGTGATTTGACAGAAATGGCGCGGGCAGGCCAGATTGAGCCTGTGATCGGCCGGGATGCAG
AGATTTCACGCATGATCCAAATCCTCAGCCGCAAGACGAAGAACAATCCTGTATTGGTGGGAGAAGCAGGGGTCGGGAAA
ACCGCCCTTGCATTAGGTCTGGCCCAGCGTGTCGCTAGTGGCAATGTTCCAGCTGAAATCGCACAAATGCGTGTCCTGGA
ATTGGATCTCATGAATGTCGTTGCAGGGACGCGCTTCCGTGGAGACTTCGAAGAACGGATGAACAATATCATCCAGGACA
TCGAAGAAGACGGTCACGTGATTCTCTTTATCGATGAACTGCATACCATTATGGGGTCAGGATCCGGCATTGATTCGACC
TTAGACGCAGCCAATATTCTAAAACCAGCCTTGGCACGAGGAACCTTGCGTACAGTTGGAGCAACGACCCAAGATGAGTA
CCAAAAGCATATCGAAAAAGATGCAGCCCTCTCTCGGCGTTTTGCGAAAGTCACCATTGAAGAGCCAAGTGTTGCAGATA
GCATCCAAATTCTCCAAGGCTTGAAAGAGACCTATCAGGACCACCATCATGTGACCATTACTGATGAAGCGATCGAGACA
GCTGTCAAATATGCCCACCGCTATTTGACCAGCCGTCAATTGCCAGATTCAGCCATTGATCTCTTGGATGAAGCGGCAGC
TACCGTACAAAACCGCGATTCCAATGGTCACGTAAAAGAAGAGTTGACCGCTTTGGATCGGGCTTTGATGGATGGCAAGT
GGAAGAAAGCAGCCCAGCTCTTAGAAGTAGAGGCCGCTCCCATTGTCTACAAAAAAGAAGTCACTGACCAAGATGTCTTG
GTGACCTTGAGCCAATTATCTGGTATTCCAACTCAAAAACTGACCCAAACCGATGCCAAGAAGTACCTAAACTTAGAAGC
AGAATTGCATAAGCGCGTGATTGGTCAAGACCAAGCCGTTTCGAGTATCAGTCGGGCCATTCGACGCAATCAATCGGGGA
TCCGTAGCAATAAACGTCCGATCGGTTCTTTCATGTTCCTAGGACCTACCGGTGTCGGAAAAACAGAATTAGCCAAAGCT
TTGGCAGAAGTTCTGTTTGATGATGAATCGGCCCTCATCCGTTTTGATATGAGTGAGTACATGGAAAAATTTGCGGCTAG
CCGCCTCAACGGTGCCCCTCCAGGCTATGTGGGCTACGAAGAAGGAGGCGAATTGACCGAGAAAGTTCGCAACAAACCAT
ATTCAGTTCTCTTATTTGATGAGGTGGAAAAAGCCCACCCAGATATTTTTAATGTCCTTTTGCAAGTCTTGGATGACGGA
GTCTTAACCGATAGCAAAGGCCGGAAGATTGATTTCTCCAATACCATTATCATCATGACCTCAAATCTGGGAGCAACAGC
CCTTCGGGATGATAAGACAGTTGGCTTTGGTGCCAAAGATATTCGCTTTGATCAGGCCAATATGGAAAAACGCATGTTTG
AAGAGTTGAAGAAGACCTATCGTCCAGAGTTTATCAACCGGATTGATGAAAAGGTGGTCTTCCATAGTCTCTCAAGCGAG
GACATGCAGCAGGTGGTGAAAGTCATGGTCAAACCGCTCATCGCGACCTTGGCCGAACAAGACATGACTCTCAAATTCCA
GCCTTCAGCGCTCAAGTTGCTAGCAACCAAAGGCTACGATCCAGAAATGGGAGCTCGCCCACTGCGTCGTGTCTTGCAGA
CCGAAGTGGAAGATCAGTTAGCAGAGCTATTGCTGAAAGGGCAAGCCCAAGAAGGTCAAACCATCAAGGTTGGAACGACA
GCCGGAACGATCAAGTTCGAGATTGTCTAG

Protein sequence :
MNYSTALLESIEAAQILAGHYQGHTLDTWHLLTAMANNPYSVAGSVLNDYPMQIDEFQDAAEHITGQAFQSDNRYEIFPF
SYRMEAIMKHAREIAQVLHAKTLGTEHVLLSLLADRGTLASQVMEFAGFAFTEQDKGVPIASLRKNLEDKAGWDKNDIKA
IRSLYRAQNPNRQTMGNMMGMPPSTSGGLEDYTRDLTEMARAGQIEPVIGRDAEISRMIQILSRKTKNNPVLVGEAGVGK
TALALGLAQRVASGNVPAEIAQMRVLELDLMNVVAGTRFRGDFEERMNNIIQDIEEDGHVILFIDELHTIMGSGSGIDST
LDAANILKPALARGTLRTVGATTQDEYQKHIEKDAALSRRFAKVTIEEPSVADSIQILQGLKETYQDHHHVTITDEAIET
AVKYAHRYLTSRQLPDSAIDLLDEAAATVQNRDSNGHVKEELTALDRALMDGKWKKAAQLLEVEAAPIVYKKEVTDQDVL
VTLSQLSGIPTQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSNKRPIGSFMFLGPTGVGKTELAKA
LAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDG
VLTDSKGRKIDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQANMEKRMFEELKKTYRPEFINRIDEKVVFHSLSSE
DMQQVVKVMVKPLIATLAEQDMTLKFQPSALKLLATKGYDPEMGARPLRRVLQTEVEDQLAELLLKGQAQEGQTIKVGTT
AGTIKFEIV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-142 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpC YP_006310743.1 ATP-dependent Clp protease, ATP-binding subunit VFG0079 Protein 6e-159 46
clpC YP_006310743.1 ATP-dependent Clp protease, ATP-binding subunit VFG0080 Protein 5e-125 46