Gene Information

Name : Q7A_1362 (Q7A_1362)
Accession : YP_006295837.1
Strain : Methylophaga sp. JAM1
Genome accession: NC_017857
Putative virulence/resistance : Virulence
Product : type IV fimbriae expression regulatory protein PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1364395 - 1365750 bp
Length : 1356 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain

DNA sequence : 
ATGAATCCACAAGCATTGATTGTCGATGATGAACCTGACATTCTTGATTTATTGTCGATGACGCTGTCAGGCATGTCGAT
AGATTGTGTTACCGCTGAGAGTATCGCTGAAGCTGAAAGACTTCTGGCACAACAATCCTTTGATTTATGTTTTACCGATA
TGCGATTGCCGGATGGCGACGGACTGGAACTGGTAAAAAAAATTCAAACCAGTTATCCGGAGCTTCCCATTGCCGTGGTG
ACTGCTTATGGCAATATGGATTTAGCAATCACAGCATTAAAATCCGGTGCGTTTGATTTTGTCTCCAAACCATTGAAATT
AAGAGTATTACGCGAGCTTGTGGATGCCGCATTAAAACTCTCGCCCAAACGGTCTCATAAAAAGGAGCGTCGTTCACGTG
ACCGTTTATTAGGTGATACTGGATTGATGCGTGAGTTGCGGGGTAAAGTTGCCAAACTGGCACGCAGTCAAGCACCGGTT
TATATCAGCGGTGAATCCGGGACGGGGAAGGAGTTGGTGGCAAGGTTAATTCATGATCTTGGTGCCCGCTCCGATAAGGC
TTTTGTTCCGGTAAACTGTGGGGCGATACCCAACGAACTGATGGAAAGCGAATTTTTTGGCCACAAAAAAGGCGCGTTTA
CCGGCGCAGTTGCCGATAAACAGGGATTATTCCAACATGCTCATGGTGGCACACTATTTCTCGATGAAGTTGCCGATTTA
CCGTTGATGATGCAGGTCAAACTGTTACGGGCGATTCAGGAAAAAGCTATTCGGCCGGTGGGATGCCACGAAGAGATCAA
TGTCGATGTCAGAATTTTATCCGCAACACATAAAAATCTTGCAGAATGCGTGGAAAAAGGAACCTTTCGTCAGGATTTAT
TTTATCGGCTTAATGTGATCGAATTACATGTACCACCATTGCGTGAACGCAAAGCTGATATCCCTATTCTGTCAGAGCAT
ATTCTATTAAAACTGGCGGGTAAGACCCAATCAGCGGTTACGGCATTAACACCTGAAGCTCTTACTTCATTAGAGCAATA
TCCTTTCCCTGGGAATGTACGTGAGCTGGAAAACACGCTTGAGCGTGCGTTGACCTGGGCAGAGGGGACACGAATAACAG
CAGAAGATTTGATGTTGCCAGCCGCTCCCCTAATAAATCATGCTGCCTCCCAGACATCAGACGTATCAATGCCTGTTTTG
GATCAGGATTTAGAGTCGCATCTGGAAGAACAGGAGCGGGCCATTATTGAAAAAGCACTAAATGAAACTCGCTGGAATAA
AACAGCTGCTGCCAAACGGCTTGGTATTACGTTTCGGGCTTTACGTTACAAGCTAAAAAAGCTGGACTTGGACTAA

Protein sequence : 
MNPQALIVDDEPDILDLLSMTLSGMSIDCVTAESIAEAERLLAQQSFDLCFTDMRLPDGDGLELVKKIQTSYPELPIAVV
TAYGNMDLAITALKSGAFDFVSKPLKLRVLRELVDAALKLSPKRSHKKERRSRDRLLGDTGLMRELRGKVAKLARSQAPV
YISGESGTGKELVARLIHDLGARSDKAFVPVNCGAIPNELMESEFFGHKKGAFTGAVADKQGLFQHAHGGTLFLDEVADL
PLMMQVKLLRAIQEKAIRPVGCHEEINVDVRILSATHKNLAECVEKGTFRQDLFYRLNVIELHVPPLRERKADIPILSEH
ILLKLAGKTQSAVTALTPEALTSLEQYPFPGNVRELENTLERALTWAEGTRITAEDLMLPAAPLINHAASQTSDVSMPVL
DQDLESHLEEQERAIIEKALNETRWNKTAAAKRLGITFRALRYKLKKLDLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 4e-103 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 4e-103 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7A_1362 YP_006295837.1 type IV fimbriae expression regulatory protein PilR BAC0089 Protein 1e-72 43
Q7A_1362 YP_006295837.1 type IV fimbriae expression regulatory protein PilR BAC0467 Protein 3e-75 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7A_1362 YP_006295837.1 type IV fimbriae expression regulatory protein PilR VFG1214 Protein 7e-134 63
Q7A_1362 YP_006295837.1 type IV fimbriae expression regulatory protein PilR VFG0116 Protein 7e-60 42