Gene Information

Name : Q7C_433 (Q7C_433)
Accession : YP_006292295.1
Strain : Methylophaga sp. JAM7
Genome accession: NC_017856
Putative virulence/resistance : Virulence
Product : type IV fimbriae expression regulatory protein PilR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 455860 - 457245 bp
Length : 1386 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain

DNA sequence : 
ATGAGTCATGCAACCCATTACGCCCAAGCACTGATTATTGATGATGAAGCGGATATTCTGGAATTAATCTGCATGACATT
GTCTGGAATGCAGATTGATTGTGTTACCGCAGAAAATCTGGCTCAGGCCAAGCAGGCAATACAACAACAAGCATTTGATT
TATGTTTTACCGATATGCGTCTGCCGGATGGCGATGGCCTTGAGTTTGTCAAATGGTTACAAGGCGTGCGTCCAGAGTTA
CCGGTTGCTGTGATTACGGCGCACGGCAATGTGGATTTGGCGGTGCAAGCGCTCAAATCCGGTGCTTTTGATTTTGTTGC
CAAACCGTTGAAATTAAGAGCGCTGCGCGATTTGGTTAATGCCGCAATGAAACTTTCCCCTGTGCGACCACGACAACAGG
AACGACGTTCCAGACATCGACTATTAGGCGACACGACGGTAATGCGAGACCTTCGCAGCAAAGTGACCAAATTATCTCGT
AGTCAGGCACCGGTATATATTAGCGGTGAATCCGGTACCGGCAAGGAGTTAGTTGCGCGTTTGATCCATGATTTGGGTGC
TCGCCGCGATCAGGCTTTTGTCCCGGTGAATTGTGGCGCAATCCCTTCGGAGCTAGTGGAGAGTGAATTTTTCGGTCATA
AAAAAGGCGCTTTTACCGGCGCAATAGCCGATAAACAGGGGCTATTTCAAGCAGCCGATGGCGGGACATTATTTTTAGAT
GAAGTTGCGGATTTGCCCTTGATGATGCAGGTTAAGCTACTACGGGCAATTCAGGAAAAAAGCATTCGGCCGGTTGGTAG
TCATGAGGAAATTACTGTTGATGTACGCGTATTATCGGCGACGCACAAAGATTTGGTGCAGTGTGTTAAAAACGGCAGCT
TTCGCGAGGATTTGTTCTATCGCTTAAATGTCATCGAGCTCAATGTCCCGGCACTGCGGGATCGTGCTTCTGATATTCCG
CTGCTTGCCGAAGCTATTTTGCAGCGGTTGGCCGACAAAAACCAACAGCGCAATCCCAGTTTGAGTGAAGCTGCCATGGC
CGCACTTCAGAATTATGCTTTTCCGGGTAATGTGCGTGAATTGGAAAATACACTGGAAAGGGCTTTAACGTGGTCGGAAG
GTGAAGAAATTAAACCGCAAGACCTAATGTTGCCCAAGCGGCCGCAGCGATTGTCAGCTGAGGATTCGCCTGAGTTCAAC
AATGATCAAAACAATGAAGAAACAGCGCTTGCAGAAGATTTATCTGCACAAATGGCTTCTCAAGAGCGCGTTTTGATTGA
GCAGGCATTGTCAGAAACACGCTGGAACCGAACGGCAGCGGCAAAAAAACTGGGAATCAGTTTTCGTGCCTTGCGCTACA
AACTCAAAAAGCTGGATATTGACTAG

Protein sequence : 
MSHATHYAQALIIDDEADILELICMTLSGMQIDCVTAENLAQAKQAIQQQAFDLCFTDMRLPDGDGLEFVKWLQGVRPEL
PVAVITAHGNVDLAVQALKSGAFDFVAKPLKLRALRDLVNAAMKLSPVRPRQQERRSRHRLLGDTTVMRDLRSKVTKLSR
SQAPVYISGESGTGKELVARLIHDLGARRDQAFVPVNCGAIPSELVESEFFGHKKGAFTGAIADKQGLFQAADGGTLFLD
EVADLPLMMQVKLLRAIQEKSIRPVGSHEEITVDVRVLSATHKDLVQCVKNGSFREDLFYRLNVIELNVPALRDRASDIP
LLAEAILQRLADKNQQRNPSLSEAAMAALQNYAFPGNVRELENTLERALTWSEGEEIKPQDLMLPKRPQRLSAEDSPEFN
NDQNNEETALAEDLSAQMASQERVLIEQALSETRWNRTAAAKKLGISFRALRYKLKKLDID

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-89 48
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-89 48

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7C_433 YP_006292295.1 type IV fimbriae expression regulatory protein PilR BAC0089 Protein 6e-65 45
Q7C_433 YP_006292295.1 type IV fimbriae expression regulatory protein PilR BAC0467 Protein 1e-70 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7C_433 YP_006292295.1 type IV fimbriae expression regulatory protein PilR VFG1214 Protein 3e-119 58