Gene Information

Name : Q7C_2063 (Q7C_2063)
Accession : YP_006293889.1
Strain : Methylophaga sp. JAM7
Genome accession: NC_017856
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2064416 - 2065018 bp
Length : 603 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGCGTGCTGGTTTTGCCGTGGATTTGGCGGTGGATGGTGTAGATGGTGAAGCATTGGGAGAGATTGAACCATACGATAT
TATTGTGCTGGATTTAGGCCTGCCCAAACGACCCGGACTGGACGTGCTGCGAAACTGGCGAAGTCGAAACCATCGTGTCC
CCGTCATTATTTTAACGGCACGGGGCAGCTGGGAAGAAAAAGTCGAAGGCTTTAACGCTGGCGCAGATGATTATGTTGCC
AAGCCGTTTCAGACTGAAGAATTACTTGCTCGTATAAATGCGGTTTTAAAGCGAAGTATGGGCTCACCAACTGGGGCGTT
AACGGCGGCAGGGCTCGTTTTGGATGAAGCCGCGCAAAAAGTCACCTTAGCTGACGGACAATCACTTAGCCTGACAGGCA
CGGAATTTCGTTTGCTGCGTTATTTTATGCTGCATCCGGGCCAGGTTATTTCCAAAAGCCGTCTGACAGAGCATGTCTAT
GATTATGATAGCGATAAGGATAGCAACGTCATGGAAGTTTACGTGAATCGACTCCGGCAAAAAATCGGTTCTCATTGCAT
CACCACACGTCGTGGACAGGGGTATGTGTTTGGTGATCAATGA

Protein sequence : 
MRAGFAVDLAVDGVDGEALGEIEPYDIIVLDLGLPKRPGLDVLRNWRSRNHRVPVIILTARGSWEEKVEGFNAGADDYVA
KPFQTEELLARINAVLKRSMGSPTGALTAAGLVLDEAAQKVTLADGQSLSLTGTEFRLLRYFMLHPGQVISKSRLTEHVY
DYDSDKDSNVMEVYVNRLRQKIGSHCITTRRGQGYVFGDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7C_2063 YP_006293889.1 DNA-binding response regulator NC_002516.2.879194.p Protein 1e-38 49
Q7C_2063 YP_006293889.1 DNA-binding response regulator BAC0111 Protein 4e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Q7C_2063 YP_006293889.1 DNA-binding response regulator VFG0596 Protein 5e-25 41