|
Name : Q7C_1531 (Q7C_1531) Accession : YP_006293367.1 Strain : Methylophaga sp. JAM7 Genome accession: NC_017856 Putative virulence/resistance : Unknown Product : type IV secretory pathway, VirD4 components Function : - COG functional category : - COG ID : - EC number : - Position : 1538582 - 1540696 bp Length : 2115 bp Strand : + Note : PFAM: Type IV secretion-system coupling protein DNA-binding domain; TIGRFAM: conjugative coupling factor TraD, TOL family; conjugative coupling factor TraD, SXT/TOL subfamily DNA sequence : ATGGAAGCGCTGTTGCGGCCTCCCGTGGAGTTGTGGTCCACCTGTACGGCGTTTGCGGCGGGTACACTGGCCTGGCTCGC CCCCTGGGCCTTGATGATGCCACCGGGTATCGCAATGGCCACCAGCCTGACCTTTTTCGGTTTTGGCTTGTGGCGGAGCC GTCAAGCATGGCGTGTATTGCGCTACCAGCATCACATGAAGCGGCTGCCGGATTACCAAGTGCGGGCCAACCAGATTCCC GTCAGTCGCCATAAGCTGTTTTTGGGCAAAGGCTTTCGCTGGAGCCAGCAACACACTCAGCGTCTGCGCGATACCCTGAA GCCCGAGGTTCAACGTTACGTTCAGCCGGGCACGCTTTACCAGTGGGCGCGACAAAAGGAAGTTGCCTGGGAATCGATTC CAGTCCTGTCTTTGCTGACCAAAGCTCTGCGTAGTCGCAGCCGTTGGAACCCGCTGGCGCCATTACCGGCCGTCGGCGGT AAGCCCGCCCTGCACGCGGTTGAACCGCAAGAGCAGCCAGTGTGGATGGATCTGGGTGAACGGGTCGGGCACACGCTGGT GTTGGGCACCACGCGCGTCGGTAAGACACGCCTGGCGGAACTGCTGATTACCCAGGACATCCGCCGGGGTGATGTCGTCA TTGTCTTCGATCCGAAAGGGGATGCCGATCTGTTGCGTCGCATCTACGCCGAGGCAAAGCGCGCCGGTCGGCTGGACGAT TTTTATCTGTTCCATCTCGGTTTTCCGGAACTGTCGGCGCGTTACAACGCCATCGGGAACTTCTCCCGCATCACCGAGGT CGCGACTCGCATCGCCAATCAGCTGCCCAACGAGGGCAACTCAGCTGCCTTCAAGGAGTTCGCCTGGCGCTTCGTGAATA TCATTGCGCGCGCCTTGGTGGCCCTGAAACGCCGGCCGGACTACCAGCAGATCCGTCGCTACATCAACGACATTGAGCCC TTGTTTGTGGAATACGCCGGGCACTGCGCCGGTGTGGCCGACATCGAAGCCTGGCCGTCTCTGGTTGAAGCGCGCGCGGC GGATATCAAAGAGCGCAATTTACCCAATGCCCTGCGTGGCCGGTCGATGGAAGCCATCGCCTGCATGCGCTTGCTGCAGG AGAAGGCCATTTATGACCCTGTCCTGGACGGGCTGATTTCCGCGTTCAAATACGATAAGACTTATTTCGACAAGATCGTC AGCTCTGTCGGCCCGTTGATGGAAAAGCTGACCACCGGCACCATCGCCGGGTTGATCTCACCGGATTACCAGGACGAGCA GGATGCGAGGCCGATCTTTGAATGGATGGATGTGGTGCGCCGCAAGGGTATCGTGTATGTGGGATTGGATGCGCTCACCG ATACCACGGTCGCCAGTGCAGTGGGCAATTCCATGTTTGCTGATTTGGTGTCTGTGGCAGGGCATATCTACAAGCACGGC GTCGCGGCCAATGGCGCTGATGCGTCCGAATCAGAACGTCAGCGGCATTCGACCCCCACCATCTCTATGCATGCGGATGA GTTCAACGAGTTGATCGGTGATGAATTCGTGCCGCTGTTGAACAAGGCGGGCGGGGCAGGCTTTCAGGTCACGGCCTACA CCCAGACCTGGTCGGACGTCGAAGCGCGTATCGGTAGTCGGGCCAAAGCGGGGCAGGTGGCCGGTAACTTCAACACTATG CTGATGCTACGAGTGAAGGAGTTGGATACTGCCGCCATGCTGACCGAGCAGTTACCGCGGGTTGAAGTCTTCACCCTGAT GAGTGTCTCTGGCGTCGATGATTCGTCGGATCCCGGTTCCGGGGTCGACTTCAAATCCCGCAACGAAGACCGGATCAGTG TCTCGGAAGTACCGATGCTAACTGCCGCCGATATGGTCACGCTGCCCAAAGGGCAGGCCTTCGCCCTGCTGGAAGGCGGC CAGCTGTGGAAAATCCGTATCCCATTGCCGGACGACCGCGAGGATACGGCCATGCCCGACGACTTCGAGGCAATAGCCGA GGCCATGCGCCGCAGCTATATCACCAACGATCACTGGTACCGGGTCACCGACCACTGGTGGCACGCAGTCTCCGAGGCCG CGATCCGACCCTCAGACGCCGGTGAGCAGGCTTGA Protein sequence : MEALLRPPVELWSTCTAFAAGTLAWLAPWALMMPPGIAMATSLTFFGFGLWRSRQAWRVLRYQHHMKRLPDYQVRANQIP VSRHKLFLGKGFRWSQQHTQRLRDTLKPEVQRYVQPGTLYQWARQKEVAWESIPVLSLLTKALRSRSRWNPLAPLPAVGG KPALHAVEPQEQPVWMDLGERVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLRRIYAEAKRAGRLDD FYLFHLGFPELSARYNAIGNFSRITEVATRIANQLPNEGNSAAFKEFAWRFVNIIARALVALKRRPDYQQIRRYINDIEP LFVEYAGHCAGVADIEAWPSLVEARAADIKERNLPNALRGRSMEAIACMRLLQEKAIYDPVLDGLISAFKYDKTYFDKIV SSVGPLMEKLTTGTIAGLISPDYQDEQDARPIFEWMDVVRRKGIVYVGLDALTDTTVASAVGNSMFADLVSVAGHIYKHG VAANGADASESERQRHSTPTISMHADEFNELIGDEFVPLLNKAGGAGFQVTAYTQTWSDVEARIGSRAKAGQVAGNFNTM LMLRVKELDTAAMLTEQLPRVEVFTLMSVSGVDDSSDPGSGVDFKSRNEDRISVSEVPMLTAADMVTLPKGQAFALLEGG QLWKIRIPLPDDREDTAMPDDFEAIAEAMRRSYITNDHWYRVTDHWWHAVSEAAIRPSDAGEQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 3e-178 | 57 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 3e-178 | 57 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 0.0 | 57 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 9e-172 | 56 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 0.0 | 56 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 1e-179 | 55 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 3e-174 | 55 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 4e-172 | 55 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 7e-174 | 55 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 0.0 | 55 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 0.0 | 54 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 0.0 | 54 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 2e-170 | 51 |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 6e-148 | 50 |
