Gene Information

Name : ABTJ_03760 (ABTJ_03760)
Accession : YP_006291603.1
Strain : Acinetobacter baumannii MDR-TJ
Genome accession: NC_017847
Putative virulence/resistance : Virulence
Product : nucleoside-diphosphate-sugar epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3888329 - 3889369 bp
Length : 1041 bp
Strand : -
Note : PFAM: NAD dependent epimerase/dehydratase family

DNA sequence : 
ATGAATCAATATGAGCAAGTATTGGAACAGCTTAAGAGTAATCCTAAAATATGGTTAATAACTGGTGTTGCAGGTTTTAT
CGGTTCTAATTTATTAGAAACTTTATTAAAGTTGAATCAAAAAGTCATAGGATTAGACAATTTTGCAACTGGATTTCAAC
ATAACTTAAATGACGTGCAGAGTTTAGTCTCGGAAGAGCAGTGGGAAAACTTTACTTTTTTTAAAGGTGATATCCGAAAT
TTAGAAGATTGCCAAAAAGTTTGTACAGGTGTGGATTATGTACTGCATCAAGCAGCTTTAGGCTCAGTACCGCGTTCTAT
TGCTGATCCTATAATGACAAATAGTGCAAACATTACTGGGTTTTTAAACATGTTAGTTGCTGCTAGAGATGCTCAAGTAA
AAAGTTTTACATATGCTGCTAGTAGTTCAACTTATGGTGACCACCCTGCTTTACCAAAAGTTGAAGAAAACATTGGGCAG
CCTTTATCTCCCTATGCAATTACGAAATATGTTAATGAGTTATATGCTAACGTATTCTCAAAAACATATAATTTTCACAG
TATAGGGTTGAGATATTTTAATGTATTTGGAAAAAGACAAAATCCAAAGGGTGCTTATGCAGCAGTAATTCCTACATGGA
CATCTCTACTTTTGCAAAAAGAACAAGTCTTTATTAATGGTGATGGTGAGACGAGTAGGGATTTTTGCTATATTCAAAAT
GCTGTGCAAGCAAATATTTTGGCTGCCACAGCTCCAAATGTACAGGAGTCAGCTGTTTATAATATCGCTTTCGGTGAAAG
GATTAGTTTAAATCAACTCTATCAAGAAATTTCTGATAATTTAAGAACACTGGCTAAACTTGAGAAAACTCAGCCGCATT
ATAGAGATTTTAGAACGGGAGATGTTCGTCACTCCTTAGCTGACATTACTAAAGCTAAAGAAATATTACATTACCAACCA
AGATATAGCGTAAGAGATGGTTTAAAGGAAGCTGTATCATGGTATGTAGCAGAGTTCAATAAAGTTGGATCTGGTAAATA
A

Protein sequence : 
MNQYEQVLEQLKSNPKIWLITGVAGFIGSNLLETLLKLNQKVIGLDNFATGFQHNLNDVQSLVSEEQWENFTFFKGDIRN
LEDCQKVCTGVDYVLHQAALGSVPRSIADPIMTNSANITGFLNMLVAARDAQVKSFTYAASSSTYGDHPALPKVEENIGQ
PLSPYAITKYVNELYANVFSKTYNFHSIGLRYFNVFGKRQNPKGAYAAVIPTWTSLLLQKEQVFINGDGETSRDFCYIQN
AVQANILAATAPNVQESAVYNIAFGERISLNQLYQEISDNLRTLAKLEKTQPHYRDFRTGDVRHSLADITKAKEILHYQP
RYSVRDGLKEAVSWYVAEFNKVGSGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 2e-109 65
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 2e-109 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
ABTJ_03760 YP_006291603.1 nucleoside-diphosphate-sugar epimerase VFG0430 Protein 7e-110 65