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Name : W5S_0975 (W5S_0975) Accession : YP_006281965.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Unknown Product : Type VI secretion protein IcmF Function : - COG functional category : - COG ID : - EC number : - Position : 1079991 - 1083488 bp Length : 3498 bp Strand : + Note : - DNA sequence : ATGTTTAAAACAATTATAACCTTTCTACGCAAGCAGTTGCCTAAACTGAAACCCTCCTGGCTGCTTTTGGGGGCGCTACT GTGGGTCGTGGTGTTGGTTCTGGCCTGGTGGCTGGGGCCGCGTTTGACGGTAGGCGAGTCGCGTCCGTTACAGGGGATCT GGGGCCGCGTGGTGTTCACGCTGGTCTGGCTGTGGCTGGCGTTCTCCTATAGTGCCTGGCTGGTCTGGCGGCGTGTGCAA CTGATGCGGTCAGAGCGTCATGAGCAACAGGTGACCGAGCAGGATCCCCTACAGGTGTATGTCGACGGCCAGCAGACGTT TCTCGATCGCTGGCTGGACGCGTTTCAGACCCAGTTGGGTAAAAAAGCGCTGTATGCGATGCCGTGGTATCTGACGATTG GTTTGGCTGGCAGTGGTAAAAGTAGCCTGATCCACCGTGCCAACCCGGCAAATAAAATGAATCCGAAGCTGGATGCAGAG CTGCGGGATGTGGCAGCAGGCCAGCAGGTGAGCAGTTGGGTCGGAGAATCTGCCGTCATCTGGGATCCTAGCGGGCAGCT ACTGGCACAGCCTGAATTGGAAGGCGATGCGCTCGGGCAGCGTCATGCTCGGCTATGGCAGCACCTGCTACAGTGGCTCA GTGAGAATCGCCGCCGCCAGCCGCTTAACGGTCTGGTTCTTACGCTGGATATCTCCTGGCTGGCACAGGCTGGTGTCGCA GATCGCAAAGCCTACGCGCAAGTCATGCGTGCCCGTTTGCAGGAAATTTCGGTCAGCATCAATACGCGTTTACCGGTGTA TATCGCACTGACTCGGCTGGATATGCTGAGCGGCTTCGACAAGGTCTATCGCCAGTTGAACCGCGACGCGCGTCAGGCGG TATTAGGGGTGACGTTTACCCCACAGGCGAGCAACAGCAAAGGCTGGTTAGAAGAGCTGGAGCGTTTTTGGGATGAGTGG GTCACGCACCTGAATGACAACCTGCCAGACATGCTGTTGACCCAATCGGACAGAAGCGTGCGCAATTCGCTGTTCTCGTT TGTTCGCCAGTTGGCCGGGGTGAAAGACTATGTGATGGAAGTGCTGACGGAAACGTTAGCAATAGGTGAAGATCGCGCGT TCCTGATCCGTGGCGTCTACGTCAGCTCTGTTTATCAACAAGGGGTGCCGTTTGATGCTTTTGCACAGTCGGCCTCCCGA CGTTATCAACTGCCAGAGCCGATTAACCCCGCGCTGCGCGGTGAATCGAATACGTTTTTTGTCCAGCGTCTCTTCCCAGA CGTCATTTTCCCTGAAGCCAGCTTGGCCGGAGAAAACCGACTGCATAGCCTCTATCGTCGGCGTCGGTTGAGTATTGGTG TGGGCTGCATGCTGCTCGCCGGTTTGGTGCTGGTGGGCAGTTGGCACCATTTCTATCGGGTCAATGAAGAAGCCGGGCGT AACGTACTGACGAAAGCGCAGGCGTTTATCGGCACTAATGAACTGGAAGGCCAACCGGGCTACGGCTATCAGCAGTTGCC GCGTCTGAATTTGATTCGTGATGCGACATTATCTTTTGGTAACTATCACGAACGCACGCCGCTGCTGGCCGATCTGGGTC TGTATCAGGGCGATAAGATCGGGCCTTATGTCGAGGGCACCTATCTGCAAATGCTGAATCAGCGCTTTTTACCGGCGGTG ATGCAGGGGTTGCTGGAGGATTTGAATCAGGCGCCTGCCAATAGCGAGCAAAAACTGACCATTCTGCGTGTAATGCGCAT GCTGGACGATGCTTCTGGGCGCAATAAAGCGCTGGTCGAACAGTTTATGGCGCAGCGCTGGCAAAAGGCATTTCCTGCTC AAGGTCAGGTGCAGGAAGAACTGATGCAACATCTGGATTACGCCCTCGATCATACCAACTGGCATCAGTCCCGTGAGCAA AAAGATGCGGTAGCGATTAGCACTTTTGCACCGTTTAATGGGCCGATTACGCTGGCTCAGCAGGAACTAAGCAAACTGCC GATGTATCAGCGCGTTTATCAGAGTCTGGTCATGAAGGCGACTCAAGTGCTGCCGCCGGATTTAGCGATCCGTGATGAAG TCGGACCGACGTTTGATCCGGTGTTTTCGCTGCGTAACGACAAAGCGGGGAGTGTGCCACGACTGCTAACCTATCCCGGC TTCAGTGATTATTATCTCAAGCAGGACAAAGCGCTGCTAGAGCTGACGGCATTGGATGCCTGGGTTCTGGGACAGCGTGA ACGTGCACAGTTCAGCGAGGCCGATCGGCGGGAAATTCTGCGTCAGGTGAATGACCGCTACATTACGGATTACATCAACC AGTGGCAGAAAGTGTTAGCGAACATTGATGTGCAGGCGCTCGATACGCCAGAACAGGCGCTAGATATCCTCACGGACATT ACCGGTAACGATCAGCCCTTCCAGCGCGTGCTGACGACGGTCAGTGATAACACCCGCATCCGTAAGCTGGCCGATGATGA TAACGACACGGCGCAGAACATCAATACGCGTACTGGTCGTCCGTTTATGACCATCAATGCGGCGCTGAGTGGACGCGGTG AGCAGGGGCCGCTGGTGCAAGAGGTCAATCAGAAACTGACCGATCTCTATCACTATCTCGACCAGATTGTTAACGCGACC GACCCGGGACAGGCGGCATTGAAGGCGATGCAGGCACGGCAGGGAAATAAATTTGCCGATCCGGTATTTGCCTTACAGCA ATATGCTCGCAGCCTCCCTGCGCCGTTGGACCGCTGGGTAGGACAATTAGCCGGAGAGAGCGCCAGTCTGGTGACTGGGC TCGCGATGTCATCGCTGAATCAGGAATGGCTGGATAAAGTCGTGACGCCATTCAACGAGAAGCTGGCGAATCGTTACCCC TTCGATCCGTCATCCGACAAAGATGTGCCGCTATCGGAAATGGAAATGTTCTTCATGACGGGCGGGACGCTGGACAGCTT CTATCAAACCAACCTCAAAGCGATGATGGAAAGCGGCATGCTGGAAGAAGGCATGGCGTCGCCTATGCAGGCCGAGCTGA TGAAACAGCTTGAACGCGCTAATCGTATCCGTCAGACCCTGTTTAATGCGCAGGGCAGCCTGGAAGTGCATTTCGTTCTG GAACCGCTGGAATTAACGGCGAACAAGCGCCGCAGCGTGCTGAATCTGGATGGACAGCTACTGGAATACAGCCACGGCCG TCGCCAGAAAACGCCGCTGGTGTGGCCAAACAGTATGCGCGACGGGGCTGAAAGCAAGTTAACACTGGTGCCGGACGATC GTGAGCGCTCGCCGCGCAGCCTGAGCTTTAACGGGCCGTGGGCCATGTTCCGGTTAATCAATAGCGATCAACTGACGAAG GTTAATGAGAACACCTTTGACGTGCGTTTCTCGCTGGAGAATGGGGCGATGACGTATCGCGTTTATACCGATGCCAGCCA TAACCCGTTTGCTGGTGGTCTGTTCAGCCAATTCACGTTGTCTGACTCGCTTTATTAA Protein sequence : MFKTIITFLRKQLPKLKPSWLLLGALLWVVVLVLAWWLGPRLTVGESRPLQGIWGRVVFTLVWLWLAFSYSAWLVWRRVQ LMRSERHEQQVTEQDPLQVYVDGQQTFLDRWLDAFQTQLGKKALYAMPWYLTIGLAGSGKSSLIHRANPANKMNPKLDAE LRDVAAGQQVSSWVGESAVIWDPSGQLLAQPELEGDALGQRHARLWQHLLQWLSENRRRQPLNGLVLTLDISWLAQAGVA DRKAYAQVMRARLQEISVSINTRLPVYIALTRLDMLSGFDKVYRQLNRDARQAVLGVTFTPQASNSKGWLEELERFWDEW VTHLNDNLPDMLLTQSDRSVRNSLFSFVRQLAGVKDYVMEVLTETLAIGEDRAFLIRGVYVSSVYQQGVPFDAFAQSASR RYQLPEPINPALRGESNTFFVQRLFPDVIFPEASLAGENRLHSLYRRRRLSIGVGCMLLAGLVLVGSWHHFYRVNEEAGR NVLTKAQAFIGTNELEGQPGYGYQQLPRLNLIRDATLSFGNYHERTPLLADLGLYQGDKIGPYVEGTYLQMLNQRFLPAV MQGLLEDLNQAPANSEQKLTILRVMRMLDDASGRNKALVEQFMAQRWQKAFPAQGQVQEELMQHLDYALDHTNWHQSREQ KDAVAISTFAPFNGPITLAQQELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDPVFSLRNDKAGSVPRLLTYPG FSDYYLKQDKALLELTALDAWVLGQRERAQFSEADRREILRQVNDRYITDYINQWQKVLANIDVQALDTPEQALDILTDI TGNDQPFQRVLTTVSDNTRIRKLADDDNDTAQNINTRTGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNAT DPGQAALKAMQARQGNKFADPVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLANRYP FDPSSDKDVPLSEMEMFFMTGGTLDSFYQTNLKAMMESGMLEEGMASPMQAELMKQLERANRIRQTLFNAQGSLEVHFVL EPLELTANKRRSVLNLDGQLLEYSHGRRQKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFNGPWAMFRLINSDQLTK VNENTFDVRFSLENGAMTYRVYTDASHNPFAGGLFSQFTLSDSLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 45 |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 45 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 45 |
