Gene Information

Name : W5S_0962 (W5S_0962)
Accession : YP_006281952.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Type VI secretion protein, VC_A0107 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1064757 - 1065260 bp
Length : 504 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAAAAGGAACTGATGGTGCATCTGTCGCACCAAAGGAACGTATTAATATCAAATATGTTCCGGCCACTGGTGGTCA
GCAGGCGGAAATAGAATTGCCGTTGACGCTGATGATCGTGGGAAATATGAAAGGGCGCACAGAGGAAACGCCGATCGAAG
AACGTCAGACCGTATCGATCGATAAGAACAATTTTACCTCCGTGATGAAAGAAGCCAATCTGGAACTGAATTTCAGTGTG
CCAAATCGCCTTGAAGAAGAGAGCCAAGACGACCTGCCAGTGAAACTGAGTATTGCTGGCTTGAATGATTTTTCTCCTGA
CCGCATCGCCCAACAAGTGCCTGAATTACGTAAGTTGCTTGATTTACGTGAAGCATTGGTCGCGCTGAAAGGCCCCCTCG
GCAATATTCCCTCATTCCGTAATCGTTTGCAGGATCTGTTGTCCAGCGAAGAAGCCAGAGAGCAGCTTTTGAAAGAGCTC
GATCTGGTGAAACCCGCCGAATAA

Protein sequence : 
MAKGTDGASVAPKERINIKYVPATGGQQAEIELPLTLMIVGNMKGRTEETPIEERQTVSIDKNNFTSVMKEANLELNFSV
PNRLEEESQDDLPVKLSIAGLNDFSPDRIAQQVPELRKLLDLREALVALKGPLGNIPSFRNRLQDLLSSEEAREQLLKEL
DLVKPAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 2e-35 54
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 8e-43 51
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 5e-43 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_0962 YP_006281952.1 Type VI secretion protein, VC_A0107 family VFG2092 Protein 2e-49 61
W5S_0962 YP_006281952.1 Type VI secretion protein, VC_A0107 family VFG2474 Protein 8e-38 50