Gene Information

Name : W5S_0850 (W5S_0850)
Accession : YP_006281840.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : Prophage CP4-57 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 937738 - 938949 bp
Length : 1212 bp
Strand : -
Note : -

DNA sequence : 
ATGGCACGGACAACCCGCCCTCTCACCCACACTGAAGTACAAAAGGCCAAAGCGACAGACAAAGATCTGACGTTGCATGA
CGGCAACGGGTTATTCCTCTTAGTCAAAACTACCGGGAAAAAGCTGTGGCGGTTCCGTTACCAGAAACCAACAACCGGCC
AGCGCACCATGATCGGATTTGGCGCTTACCCAGCGTTGTCATTAGCCGACGCCCGCGCAATGAGAGACGAAAAACTGTCT
TTGTTAGCCAAAGGTATCGATCCACAGGAAAAGGCGGCTAAAGAAGAGGAAGAGGCGAAAATCGCAGTAGAAAGCATCTT
TCTTAACGTAGCGCGTAGCTGGTTCGCGTTGAAACAGACGAATGTCAGCGCCGATCACGCCAAAGATATTTGGCGCTCGT
TGGAAAAAGATGTCCTCCCAGCGATTGAGAACATACCGGTGCAGGACATCAAAGCCCGCACGCTGATACAGGCGTTAGAG
CCGATTAAAGCGCGTGGTGCACTGGAAACCGTCAGGCGGTTGGTGCAGCGCATTAACGAAATCATGGTTTACGCGGTCAA
TACGGGGCTAATTGATGCTAACCCAGCGTCTGGCATTGGTATGGCCTTTGAGCGCCCTAAAAAGCAGCATATGCCGACTA
TCCGGCCAGAAGAACTCCCCAAGCTGATGCACACCATCGCCATGTCTAACCTGTCCATTCCAACCCGTTGCTTATTAGAA
TGGCAGCTACTGACGCTAATTCGCCCGGCAGAAGCCTCCGCAACGGCATGGGCAGAGATCGATATGGAGAAAAGAACGTG
GAGCATTCCGGCTGAACGCATGAAAGCCAAGCGTGATCATATCGTTCCGCTCTCCGATCAGGCGCTGGAACTGCTCGACA
TCATGCGCCCTATCAGCGGCAACCGCGAACATGTATTCCCCAGCCGCAACGATCCTAAAAAACCCATGAACAGCCAGACC
GCCAACGCCGCATTAAAACGCATAGGCTACGGTGGCAAACTGGTCGCACATGGTTTACGCTCGATAGCCAGCACCGCCAT
GAATGAAGCCGGTTTTAATCCTGATGTGATTGAAGCGGCGTTGGCGCATTGTGATAAAAACGAAGTTCGACGGGCTTATA
ATCGCTCTACCTACCTTGAGCAGCGGAAAGAGTTGATGGATTGGTGGGGGAATTTTGTCTATAACCGTCATCAACTAATG
CAGGCTGTATAA

Protein sequence : 
MARTTRPLTHTEVQKAKATDKDLTLHDGNGLFLLVKTTGKKLWRFRYQKPTTGQRTMIGFGAYPALSLADARAMRDEKLS
LLAKGIDPQEKAAKEEEEAKIAVESIFLNVARSWFALKQTNVSADHAKDIWRSLEKDVLPAIENIPVQDIKARTLIQALE
PIKARGALETVRRLVQRINEIMVYAVNTGLIDANPASGIGMAFERPKKQHMPTIRPEELPKLMHTIAMSNLSIPTRCLLE
WQLLTLIRPAEASATAWAEIDMEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISGNREHVFPSRNDPKKPMNSQT
ANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAALAHCDKNEVRRAYNRSTYLEQRKELMDWWGNFVYNRHQLM
QAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 1e-104 53
int AAK20773.1 integrase Not tested VPI Protein 8e-103 52
int AAK20803.1 integrase Not tested VPI Protein 8e-103 52
unnamed AAA82714.1 integrase Not tested VPI Protein 8e-103 52
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 1e-102 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 1e-102 52
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 3e-86 46
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 3e-86 46
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 3e-86 46
int AAD44730.1 Int Not tested SHI-2 Protein 3e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_0850 YP_006281840.1 Prophage CP4-57 integrase VFG1092 Protein 1e-86 46