|
Name : W5S_0837 (W5S_0837) Accession : YP_006281827.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Virulence Product : ShiF Function : - COG functional category : - COG ID : - EC number : - Position : 923038 - 924249 bp Length : 1212 bp Strand : - Note : - DNA sequence : GTGACTCCTCTTGAGATAGCCGACGCGCCGCAAAAATCCTTGTCCTGTTGGCCGCTGGCGTTCAGCGCGGGGCTACTTGG CGTCGGGCAGAATGGCCTGCTGGTGGCGATCCCGGTTCTGGTGATTCAGACAAACCTTAGCCTGTCGATTTGGGCGGCGC TGTTAACGCTTGGCTCAATGCTGTTTCTGCCATCGTCGCCGTGGTGGGGAAAACAGATCGCGCGCCGGGGCAGCAAACCG GTGGTGCTCTGGGCGCTGGGGGGATACGGCGCGAGCTTTGCGCTGCTTGGCCTGGGCAGCGTGCTGCTGGCGACTCACGC CATTCCTCCGGGGGCGGGCATCGGGTTGTTAATTATCGCACGGATTATCTACGGGCTTACCGTGTCGGCGATGGTTCCGG CCTGTCAGGTCTGGGCCTTACAGCGCGCAGGGGAAGCCAAACGAATGGCGGCGCTGGCGACCATCAGTTCGGGATTAAGC TGCGGTCGACTGTTCGGGCCGCTGTGCGCCGCGGCGATGCTGACGCTGCATCCGCTTGCGCCGATGGCGCTGTTAATGGT CGCGCCGCTGCTGGCGCTTATCATGCTGCTGCGTTTACCGGGCACGCCGCCGCAGCCCGCAGCCAGTCGCAAAAGCGTGC GCCTCACGCCTGTATGCCTGCCGTATCTCCTCTGCGCGCTGCTGCTGTCGGCGACCGTCAGCCTGATGCAGCTTGGCCTG TCTCCCGCGCTCGCCCGCCAGTTCGCCACGGATACCGCCGCGATTAGTCATCAGGTAGCGTGGCTGCTCAGCGTGGCGGC GGTAGCATCGCTGATTGCTCAGTTTGGCGTGCTGCGCCCCCAGCGGCTGACGCCGATGGCGCTGCTGTTAAGCGCCGGGG CACTCATGTTATGCGGTCTGGCGTTAATGATAGCCGTTCCGCTGTGGCTGTTTTATCCCGGCTGCGCGCTGATCTCCTTT GGGGCTGCGCTGGCGACGCCCGCCTATCAGCTTTTGCTTAACGACAAACTTGCCGACGGCGCGGGCGCAGGCTGGGTTGC CACCAGCCACACGCTGGGCTACGGACTTTGCGCCATGCTAGTGCCGCTGGTCTCGCGAACCGGCGTCAGCGTGGCGCTGC TGGTGACGGCTTTTGTCGCCGCCGCTATCTTCACCGGGGTGTCTGGCTTTATCTGGCTCAGCCGCCGCCATTCATCGTCT TCCGCAATCTAA Protein sequence : MTPLEIADAPQKSLSCWPLAFSAGLLGVGQNGLLVAIPVLVIQTNLSLSIWAALLTLGSMLFLPSSPWWGKQIARRGSKP VVLWALGGYGASFALLGLGSVLLATHAIPPGAGIGLLIIARIIYGLTVSAMVPACQVWALQRAGEAKRMAALATISSGLS CGRLFGPLCAAAMLTLHPLAPMALLMVAPLLALIMLLRLPGTPPQPAASRKSVRLTPVCLPYLLCALLLSATVSLMQLGL SPALARQFATDTAAISHQVAWLLSVAAVASLIAQFGVLRPQRLTPMALLLSAGALMLCGLALMIAVPLWLFYPGCALISF GAALATPAYQLLLNDKLADGAGAGWVATSHTLGYGLCAMLVPLVSRTGVSVALLVTAFVAAAIFTGVSGFIWLSRRHSSS SAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| shiF | AAD44744.1 | ShiF | Virulence | SHI-2 | Protein | 3e-83 | 80 |
| shiF | YP_002414047.1 | putative membrane transport protein, major facilitator superfamily | Not tested | Not named | Protein | 7e-83 | 80 |
| imm | NP_839224.1 | membrane transport protein | Not tested | SHI-2 | Protein | 3e-83 | 80 |
| imm | NP_709453.1 | membrane transport protein | Not tested | SHI-2 | Protein | 3e-83 | 80 |
| unnamed | AAD54670.1 | unknown | Not tested | SHI-2 | Protein | 9e-83 | 80 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| W5S_0837 | YP_006281827.1 | ShiF | VFG0614 | Protein | 1e-83 | 80 |
