Gene Information

Name : W5S_0580 (W5S_0580)
Accession : YP_006281578.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : 2,3-dihydroxybenzoate-AMP ligase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 627821 - 629449 bp
Length : 1629 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCATTGAATTTACGCCCTGGCCAGAGGAACTGGCACAGCGTTATCGCGACAAGGGGTACTGGGCTGGCTTGCCGTT
AACGGATGCCTGGGAACGCCATCTGACGACACAGCCGGATGCGGTTGCCGTCGTTTGTGGCGAACGTCAGTGGAGCTATC
GAGAACTGGACCAACAGTCTTCCGCGCTGGCATCGCGCCTGACGGAAAGCGGCCTACGCTGTGGTGACACTGCGCTGGTA
CAACTGCCGAACGTCGGCGAATTTTATCTGACCTTTTTTGCGTTGCTGAAAATGGGCGTCGCGCCAGTTAACGCGTTGTT
CAGCCATAACAAACTGGAACTGCTGTCGTATGCCACGCAGATCGAACCGCGTTTGCTGATCGCATCGGCCGAACATCCAC
TGTTTGGCAACGGTGAATTTCTGGATCGGCTACAAACGCAGGTTCCTGGCCTGCAAACGGTGGTGATGCTTGGCGACAGC
CCGCTGGGGCACAGCCTGTCTGACTGGCTGCAACTACCTGCTTCAACCAGCGAATACCAGCCTTCCGCATCGGGACAGGT
CGCCTTTTTCCAGCTTTCCGGCGGTAGTACCGGCACGCCGAAGCTGATTCCCCGTACCCATGATGATTACTACTACAGCG
TGCGCCGTAGCGTGGAAATCTGTGAGCTAACGCCACAAACCCGTTACCTGTGCGCGTTGCCAGCACCGCATAATTTCCCG
TTAAGCTCGCCCGGTTCGCTTGGCGTGTTTTATGCTGGTGGACGCGTGGTGCTGGCGTCCGATCCGGGGGCGATGACCTG
CTTCCCGCTGATCGAACGACATCAGATCGATATTACCTCGCTGGTGCCGCCTGCTGCCGCGTTGTGGATCCAGGCGGCAG
AACAGTTTGGTGCGGCGCTGCGTAGCCTGAAAGTCTTGCAGGTGGGGGGCGCAAAGCTAAGTGAAACCGTCGCCCGACGC
ATCCCGGCGGTCTTGGGTTGCCAGCTACAGCAGGTGCTTGGGATGGCGGAAGGGCTGGTGAACTACACCCGACTGGATGA
CAGCGATGAACATACCTTTACCACGCAAGGCTGCCCGATGAGCCCGGACGATGAAGTGAAGGTGTTAGACATAGAGGGTA
ATTCGGTGCCGAGGGGCGAAGCGGGGCTGCTGGCGACGCGTGGCCCGTACACCTTCCGTGGCTATTACCGCAGCCCGGAG
CACAATGCCCGTGCTTTCGACAGTGAGGGTTTCTATCATTCGGGCGATGTAGTGCAGATGACCGAAGAAGGCTATTTGCG
CGTGGTTGGGCGGGAGAAAGATCAGATTAACCGAGGTGGTGAAAAGATCGCTGCCGAAGAGATTGAAAACCTGTTGCTCA
AGCATGACGGCATTCTCCATGCTGCGCTGGTATCCATGCCCGATCCGGTCATGGGCGAAAAGAGCTGCGCTTTTCTGGTG
GTCAGCGATCCCTCTCTGAAAGCCATCGCGTTAAGAAAATATCTTCGTAATCAGGGGATTGCTGAATTCAAACTGCCGGA
TCGCTTTGAGATGATCGATACTTTGCCCGTCACGCCGGTCGGCAAGATTGATAAGAAATTACTCCGTCAGCGCATTCAGG
CGCAACTGAGCATTCAAGACCCAACGTAG

Protein sequence : 
MSIEFTPWPEELAQRYRDKGYWAGLPLTDAWERHLTTQPDAVAVVCGERQWSYRELDQQSSALASRLTESGLRCGDTALV
QLPNVGEFYLTFFALLKMGVAPVNALFSHNKLELLSYATQIEPRLLIASAEHPLFGNGEFLDRLQTQVPGLQTVVMLGDS
PLGHSLSDWLQLPASTSEYQPSASGQVAFFQLSGGSTGTPKLIPRTHDDYYYSVRRSVEICELTPQTRYLCALPAPHNFP
LSSPGSLGVFYAGGRVVLASDPGAMTCFPLIERHQIDITSLVPPAAALWIQAAEQFGAALRSLKVLQVGGAKLSETVARR
IPAVLGCQLQQVLGMAEGLVNYTRLDDSDEHTFTTQGCPMSPDDEVKVLDIEGNSVPRGEAGLLATRGPYTFRGYYRSPE
HNARAFDSEGFYHSGDVVQMTEEGYLRVVGREKDQINRGGEKIAAEEIENLLLKHDGILHAALVSMPDPVMGEKSCAFLV
VSDPSLKAIALRKYLRNQGIAEFKLPDRFEMIDTLPVTPVGKIDKKLLRQRIQAQLSIQDPT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 3e-89 42
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 3e-88 42
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 4e-89 42
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 4e-89 42
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 4e-89 42
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 4e-89 42
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 4e-89 42
ybtE CAA21394.1 - Virulence HPI Protein 4e-89 42
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 2e-88 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_0580 YP_006281578.1 2,3-dihydroxybenzoate-AMP ligase VFG0932 Protein 2e-166 64
W5S_0580 YP_006281578.1 2,3-dihydroxybenzoate-AMP ligase VFG0168 Protein 3e-110 46
W5S_0580 YP_006281578.1 2,3-dihydroxybenzoate-AMP ligase VFG1817 Protein 4e-88 41