Gene Information

Name : W5S_4670 (W5S_4670)
Accession : YP_006285588.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Enterobacterial Ail/Lom family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5023029 - 5023577 bp
Length : 549 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAAAAACAACACTGCTGCTTTCCACTCTGATTGCTTGTGCCATGGGAATGTCTGCTGCTCAGGCGACACAAACGGT
GTCATTGGGTTACGCTCAGGCGAAAGTTGAGGATTTTAAAGATCTGAAAGGAGTTACGGCCAAATACCATTATCAGGGTG
ATTCCGCACTGGGTATTATTGGTTCTTTTACCTATTTAAGCGGTAAAAAAGATTATAATCAGCGAGCTATTGGATTCAGC
TCACACGAGAGCGACGATGTTAAATATTACTCTCTAATGGCAGGGCCTTCCTATCAACTTAACGATATTGTTAGTGTTTA
TGGTCTTGCTGGTTTAGGTCATGCTAAGGTGGACAATTCGCGTCACTATACATCCTCTAGTGTGTCAGGAAGCGAAAGTT
ATAGTGAGAGTAAAACCAAATTTGCTTACGGTGCCGGTATTCAAATTACGCCAGCAGCAAACTGGGCGATTGATATTGGC
TACGAAGGTACGAAAATCTATGAAGCTCGTGTAAACGGCTTTAATATTGGCGTCGGCTATCGTTTCTGA

Protein sequence : 
MKKTTLLLSTLIACAMGMSAAQATQTVSLGYAQAKVEDFKDLKGVTAKYHYQGDSALGIIGSFTYLSGKKDYNQRAIGFS
SHESDDVKYYSLMAGPSYQLNDIVSVYGLAGLGHAKVDNSRHYTSSSVSGSESYSESKTKFAYGAGIQITPAANWAIDIG
YEGTKIYEARVNGFNIGVGYRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4321 NP_289546.1 PagC-like membrane protein Not tested OI-122 Protein 1e-25 45
pagC YP_216243.1 PhoP regulated protein: reduced macrophage survival Not tested SPI-11 Protein 1e-28 45
Z4321 AAQ19134.1 putative PagC-like membrane protein Not tested PAI I CL3 Protein 1e-24 44
unnamed ADD91732.1 putative PagC-like membrane protein Not tested PAI-I AL862 Protein 1e-26 44
pagC AGI37350.1 PagC Virulence OI-122 Protein 5e-17 43
pagC AGI37337.1 PagC Virulence OI-122 Protein 5e-17 43
pagC AGI37342.1 PagC Virulence OI-122 Protein 5e-17 43
pagC AGI37344.1 PagC Virulence OI-122 Protein 5e-17 43
pagC AGI37346.1 PagC Virulence OI-122 Protein 5e-17 43
pagC AGI37348.1 PagC Virulence OI-122 Protein 3e-17 43
pagC AGI37351.1 PagC Virulence OI-122 Protein 3e-17 43
pagC AGI37340.1 PagC Virulence OI-122 Protein 1e-17 43
pagC AGI37347.1 PagC Virulence OI-122 Protein 1e-17 43
pagC AGI37341.1 PagC Virulence OI-122 Protein 1e-16 42
pagC AGI37349.1 PagC Virulence OI-122 Protein 1e-16 42
pagC AGI37352.1 PagC Virulence OI-122 Protein 1e-16 42
pagC AGI37353.1 PagC Virulence OI-122 Protein 2e-16 41
pagC AGI37343.1 PagC Virulence OI-122 Protein 2e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_4670 YP_006285588.1 Enterobacterial Ail/Lom family protein VFG0442 Protein 8e-28 43