Gene Information

Name : W5S_0459 (W5S_0459)
Accession : YP_006281457.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : P4-like integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 498418 - 499674 bp
Length : 1257 bp
Strand : +
Note : -

DNA sequence : 
ATGGCACTGACCGACGTTGTTGCCCGTACCGCAAAGCCCCGCGAGAAAGCCTATAAGCTCGCGGACGCGCACGGCCTGTA
TCTTTTGGTGAGTCCTAACGGCTCTAAGCGCTGGTATCTCAAGTACCGCTTTGAAGGTAAGGAAAGCCGGATTGCGTTCG
GTGCCTATCCGCTAGTCTCGCTGGCGAAGGCCAGAGAGAAGCGCGATGAGATACGATTGCTGCTGTTGGAGGGTATCCAC
CCCACGGAAAAGCGCGAAGAAGAAAAAGAGCAGGCGCAAGAGGCGTTGAATACTTTTGAGAAGGTCGCACAGGACTGGCA
CCGAAACATTAGCCAAAACCGCTGGTCAGAAACACACGCCGGACGGGTATGGCGTGACATGGAACGAAATCTACTGCCTG
CTATCGGGCATCGCCATATTGCCGACCTGAAAACTAAAGACCTGCTCGAACCGCTGAAAGTCGTCGAACAAAACGGCCAT
CTTGATTTGGCGTCACGGCTGCGTCAGCGTGTCACCGATATCATGCGTTACGCGGTGCAAAACGATCTAATCGAGCGCAA
CCCCGCGCAAGACCTCTCCGGCGCGATAGCTGCGCCCAAGGCCACCCACCGACCAGCCCTGAAACTGAATACACTGCCGG
ATTTTCTGGCACGGATAGAACGCCACAAAGGGCGGGCGTTAACCAGACTGGCCTTAAAACTCACGCTGTGCGTTTTTATC
CGCTCCAGTGAGCTACGTTTTGCCCGCTGGCCGGAAATCGATTTTAAACGTGCCATGTGGACGATACCGGCTGAACGTGA
AGCCATTCCCGGCGTGAAGCATTCGCAGCGTGGCGCAAAGATGCGCTCTGAACATCTGGTGCCGTTATCCCGACAGGCTT
TAGCGCTGCTGGAAGAGATTAAGGCCATCAGCGGTGCTCATGAACTGATCTTCCCCGGCGATCGTCGGCCAACTAAACCG
ATGAGTGAAAACACCGTCAACAACGCATTACGAACCATGGGCTATGACACCACTACCGAAGTGTGCGGACACGGCTTCCG
CACCATGGCCTGTAGCGCACTGGTAGAATCCGGTCAGTGGTCACGGGATGCGGTAGAGCGCCAGATGAGTCATCAGGAAC
GCAACGGTGTTCGTGCTGCCTATATCCACAAAGCGGAACATCTTGATGAGCGCAGACTAATGTTGCAATGGTGGGCGGAT
TATCTGGATGCCAATCGGGAAGAATATGTGGTGCCGTATGAGTTTAAAAATGTTTGA

Protein sequence : 
MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLVSLAKAREKRDEIRLLLLEGIH
PTEKREEEKEQAQEALNTFEKVAQDWHRNISQNRWSETHAGRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKVVEQNGH
LDLASRLRQRVTDIMRYAVQNDLIERNPAQDLSGAIAAPKATHRPALKLNTLPDFLARIERHKGRALTRLALKLTLCVFI
RSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEEIKAISGAHELIFPGDRRPTKP
MSENTVNNALRTMGYDTTTEVCGHGFRTMACSALVESGQWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWAD
YLDANREEYVVPYEFKNV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-112 62
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 5e-116 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 5e-116 61
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-113 60
int AAK16198.1 Int Not tested PAI-I AL862 Protein 1e-114 60
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-112 60
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 1e-114 60
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-112 59
int AAK00456.1 Int Not tested SHI-1 Protein 4e-105 59
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 3e-113 59
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-113 59
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 2e-113 59
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-113 59
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-113 59
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-114 59
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-114 59
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-114 59
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-114 59
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-114 59
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-114 59
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-113 59
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-113 59
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-105 58
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-113 58
int CAC81896.1 integrase Not tested LEE II Protein 3e-106 58
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-104 57
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-104 57
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-86 57
int YP_002346908.1 integrase Not tested HPI Protein 8e-106 56
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 8e-106 56
int CAB59974.1 integrase Not tested HPI Protein 2e-106 56
int2 NP_993013.1 integrase Not tested HPI Protein 8e-106 56
int CAA08754.1 integrase Not tested HPI Protein 2e-106 56
int CAA21384.1 - Not tested HPI Protein 8e-106 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-71 56
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 4e-97 55
unnamed AAD17660.1 unknown Not tested HPI Protein 2e-102 54
int AAD44730.1 Int Not tested SHI-2 Protein 2e-68 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 7e-64 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-68 42
int ACU09430.1 integrase Not tested LEE Protein 5e-68 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-68 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-68 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-68 42
int CAC39282.1 integrase Not tested LPA Protein 9e-69 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-67 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-67 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-67 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_0459 YP_006281457.1 P4-like integrase VFG1536 Protein 2e-112 62
W5S_0459 YP_006281457.1 P4-like integrase VFG1693 Protein 5e-114 60
W5S_0459 YP_006281457.1 P4-like integrase VFG0626 Protein 2e-113 59
W5S_0459 YP_006281457.1 P4-like integrase VFG0783 Protein 3e-68 42
W5S_0459 YP_006281457.1 P4-like integrase VFG0598 Protein 3e-67 42