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Name : W5S_3903 (W5S_3903) Accession : YP_006284838.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Virulence Product : Type IV-A pilus assembly ATPase PilB Function : - COG functional category : - COG ID : - EC number : - Position : 4213635 - 4215107 bp Length : 1473 bp Strand : + Note : - DNA sequence : ATGACTGACTCCGCCTTTTCCACCGAACGTACACTCAGCGAGTTACAGACGTTGTGCCGACGTTATCAGGCATTATTACT CAGCATTGATGAACAAACGCTGTCGGTCGCCGTCACGGTGTCCCCTTCTTCAGAGATGATCGCCGCACTGCGTTTCGCCA GCAACCGTCGAATTATGGTGGAACAGTGGCCACAGGCCAGAATGGAACAACAGCTTAACCCAGTGAACGCCGTTGCGGAG CCCGCAGAAACCTATCATGCCGGTACTTATCACACCAACATCGGGCAGCAGGATCATGGCGACGATTCCCCCGTCGCGCA GTTTATCCATCAAACGCTGCGCCTCGCCGTTCAGCGCCGCGCCTCTGATATTCACTTTGAGCCACAGCCAGACAACTACC GTGTGCGGCTACGCATTGACGGTGTATTGCAAGCCATATCCGCGCCACCTCCAGAGTTGACAGGCCGGATTACCGCAAGG CTGAAAATCATGGGCAAATTGAATATCGCCGAACGGCGGTTACCGCAGGATGGTCAGTTTAGCCTAATGCTGGATCAACA GCCCTATTCGTTACGCATCGCCACCCTCCCCGTGCAGCAGGGAGAAAAAGTCGTACTGCGTATTTTACAAACGCACCAGC AAGAGCTGGCACTGGATAAACTCGGACTCACCGCAAAGGCATTACAGCAGGTTATTAGTGTGCTGAGCGCCGCACAGGGG ATGATACTCGTCACCGGCCCAACAGGCAGTGGCAAAACCGTGACGCTTTACAGTGCGATACGCTGGCTGAACGATAGCAG CCGCAATATCTGTAGCGTGGAAGATCCGGTCGAAATCCCCTTGCAGGGCATCAACCAAACGGCAATCAATCCCAAAGCGG AACTGGGCTTTGGTAGAATTTTACGTGCGCTGCTGCGGCAAGATCCAGACATCATTATGATTGGTGAAATCCGCGATGCT GAAACCGCAGAAATTGCGGTAAAAGCCGCACAAACCGGCCATCTGGTCATGTCAACGTTGCATACCAACTCTGCGGTAGA AACCCTGACCCGTCTCAACCATCTGGGCATTCCCGGCTATCTGTTAGCGGCGGCGCTAAAACTCATCGTCGCACAGCGAC TTGTACGCCGATTATGCCCGCACTGTAAAACCCCGGGAGAGCCGCTACTCTCACTGCCAAATGACATATGGCAAGGGCCA CTACACCACTGGCAAGCCAATGGTTGCAGCCACTGTTTCTCTGGCTACTATGGCCGTGTCGCGCTCTATGAATTATTGCC CATCACGCCGGTTTTTCAGGCTGCGTTAGCAGGCAATGTCAGCATTGGGACATTATCTGCCTTATCGCAAGACTCTGGTT TCCCAACGCTGCTAGCCGCGGGGATCGAGCTAGTCAACGACGGCCTAACTTCACTTGCTGAGGTCTACCGTACTGTAGGT GATGAGTGGTCGATAAATCAGGAGGAGCCATGA Protein sequence : MTDSAFSTERTLSELQTLCRRYQALLLSIDEQTLSVAVTVSPSSEMIAALRFASNRRIMVEQWPQARMEQQLNPVNAVAE PAETYHAGTYHTNIGQQDHGDDSPVAQFIHQTLRLAVQRRASDIHFEPQPDNYRVRLRIDGVLQAISAPPPELTGRITAR LKIMGKLNIAERRLPQDGQFSLMLDQQPYSLRIATLPVQQGEKVVLRILQTHQQELALDKLGLTAKALQQVISVLSAAQG MILVTGPTGSGKTVTLYSAIRWLNDSSRNICSVEDPVEIPLQGINQTAINPKAELGFGRILRALLRQDPDIIMIGEIRDA ETAEIAVKAAQTGHLVMSTLHTNSAVETLTRLNHLGIPGYLLAAALKLIVAQRLVRRLCPHCKTPGEPLLSLPNDIWQGP LHHWQANGCSHCFSGYYGRVALYELLPITPVFQAALAGNVSIGTLSALSQDSGFPTLLAAGIELVNDGLTSLAEVYRTVG DEWSINQEEP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 4e-70 | 42 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 3e-70 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| W5S_3903 | YP_006284838.1 | Type IV-A pilus assembly ATPase PilB | VFG2426 | Protein | 8e-81 | 46 |
| W5S_3903 | YP_006284838.1 | Type IV-A pilus assembly ATPase PilB | VFG0182 | Protein | 5e-74 | 44 |
| W5S_3903 | YP_006284838.1 | Type IV-A pilus assembly ATPase PilB | VFG0233 | Protein | 1e-73 | 44 |
| W5S_3903 | YP_006284838.1 | Type IV-A pilus assembly ATPase PilB | VFG1876 | Protein | 2e-76 | 43 |
| W5S_3903 | YP_006284838.1 | Type IV-A pilus assembly ATPase PilB | VFG2048 | Protein | 8e-72 | 43 |
