Gene Information

Name : W5S_3871 (W5S_3871)
Accession : YP_006284806.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Ferric enterobactin transport system permease protein fepD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4165632 - 4166684 bp
Length : 1053 bp
Strand : +
Note : -

DNA sequence :
ATGCCCGTTTATCCTTCCAGCGTAGCGAATCGCACATCATACGATCCTCGCAGGGTTGATATTCGACGCTGGCGTGGTGT
CACACTATGTTTACTGCTCATCACGCTCGGTGCCATTGCCAGCCTAATGCTGGGTGCAAAATCCATTGCACCGGAAGCCG
TGTGGATGAGCCTGACAGGCCAACTCCACAACGCAGACAGTATTATTATTCTCGACGCCCGTTTACCGCGCACGCTGGCA
GGCATCATTGCCGGGATCGCGCTCGGCGGTTCCGGTGCGATCATACAAGCGCTGACCCGTAACCCCCTCGCCGACCCAGG
TATTCTTGGCGTCAACGCGGGTGCCAGTTTCGCCATTGTTATGGGCATCATTTGGTTCGGCATCACCGACATGGCTTCCT
GGCTTGGATTTGCCTGGCTCGGCGTTTTGGTGACCAGCGTGGTGGTATGGGTTATCGGCTCGCTCAGCGGTGGGCGCGTT
AATCCTATTCGCTTAACGTTGACCGGTGTCGCCCTCAGCGCCGTTCTCACTGGCATAACGTCTTCAGTTTCGCTACTGAA
TCCCGATGCATTTGACCAAATGCGCATGTGGGAGGCGGGTACGCTGGATATTCGTTCCCTGCATAACATTACACTGGTCG
CCCCCATTGTGTTGCTGGGAGGCGGATTAGCGTTAATCATCGCCCGTGCGCTCAATGCATTAAGCATGGGTGACGACATC
GCTACCGCACTCGGCACCCGCACCATATTGATCCGCTCCGTCGCCGTGATCGCCATCATGCTGATGTGCGGTTCGGCAAC
CGCGCTGGTGGGGCCTATCGGTTTTGTTGGCTTGATGATCCCGCATATCGCCCGCTGGTGGGCAGGACCAGACCAGCGCT
GGATCGTACTTTATTCGATGCTGCTCGCTCCAGTGCTGTTATTGTGCGCCGATATTCTCGCCCGTCTACTGGCACCGAGT
GAACTGCGCGTTTCGATCATAACCGCATTTATCGGCGCACCCGTACTGATTTGGCTGGTTCGCCGCCACAACATAGTAGG
AAACGAGCGATGA

Protein sequence :
MPVYPSSVANRTSYDPRRVDIRRWRGVTLCLLLITLGAIASLMLGAKSIAPEAVWMSLTGQLHNADSIIILDARLPRTLA
GIIAGIALGGSGAIIQALTRNPLADPGILGVNAGASFAIVMGIIWFGITDMASWLGFAWLGVLVTSVVVWVIGSLSGGRV
NPIRLTLTGVALSAVLTGITSSVSLLNPDAFDQMRMWEAGTLDIRSLHNITLVAPIVLLGGGLALIIARALNALSMGDDI
ATALGTRTILIRSVAVIAIMLMCGSATALVGPIGFVGLMIPHIARWWAGPDQRWIVLYSMLLAPVLLLCADILARLLAPS
ELRVSIITAFIGAPVLIWLVRRHNIVGNER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 5e-26 43
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 5e-26 43
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 5e-26 43
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 5e-26 43
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 2e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_3871 YP_006284806.1 Ferric enterobactin transport system permease protein fepD VFG0926 Protein 5e-53 57