Gene Information

Name : W5S_3859 (W5S_3859)
Accession : YP_006284794.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Ribokinase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4154127 - 4155083 bp
Length : 957 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAGGCAAGGTTTGCGTATTTGGCTCGTTCAATCTGGATATTGTGGCGGGGATGTCCCGCTTTCCACAGCCGGGAGA
GTCGCTGATTGCTCACCGCAGCATGATGGGGCCGGGCGGAAAAGGGGCGAATCAGGCGACGGCGGCGTTGCGTGCGGGGG
CGCGCGTACACTACATCGGTAAAATTGGTAATGACGACTTTGGCCTGTTTGCTCGGCGTCATCTCGAAAAGACCGGCTTT
GATGCTATCACGCTCTTTACCTGTAAGGAAAAACCGACGGGGAATGCGCTGATCTATGTGGCCGGTAATGATGCGGAAAA
CATGATTTCCGTCTATCCCGGTGCCAATTTGATGGTGACGGCGGCGGAGATCGCGCGCTGCCAGCCGACGGTAGCCGAGG
CGGATATTTTATTGATTCAGCTAGAAAATAATCTTAGCGCGATTCAGCGTATCGTGGATAGCGCGCAGGCGGCGAATACC
TTCGTCATTATGAATCCCGCTCCCTGGCAGAAAGTGAGTGACGCTTTGCTCAGTAAGATCGATCTGCTGACGCCAAATAG
CACCGAAGCCACGCTATTGACGGGTATCTCCGTCACCGATATCGACAGCGCCCAGCGTGCCGCCGCGGTGCTGCATCAAA
AAGGGGTGCGGCAGTTGGTGATCACGCTCGGCATGCAGGGGGCGTTATTATCCACCGGTGATACTCAGTCCCATATCCCT
GCGTTTCCTGCGCAACCCAAGGACACCACGGGAGCGGGCGATGCGTTTAATGGCGCGCTGGCCGCGAGGCTGGCAGCGGG
CGACTCCCTGGAACAGGCGGCGCTCTTTTCCTCTGCCTATGCCTCACTTTGCGTTGAGCGCGAAGGTGCTGCGCATGCGA
TGCCGCGCTATGAGGAAGCGCTTGAACGGATGCAGCAGCACGCGGAGCTGCTGCACGATACGGGGAACGTTCGTTAG

Protein sequence : 
MKGKVCVFGSFNLDIVAGMSRFPQPGESLIAHRSMMGPGGKGANQATAALRAGARVHYIGKIGNDDFGLFARRHLEKTGF
DAITLFTCKEKPTGNALIYVAGNDAENMISVYPGANLMVTAAEIARCQPTVAEADILLIQLENNLSAIQRIVDSAQAANT
FVIMNPAPWQKVSDALLSKIDLLTPNSTEATLLTGISVTDIDSAQRAAAVLHQKGVRQLVITLGMQGALLSTGDTQSHIP
AFPAQPKDTTGAGDAFNGALAARLAAGDSLEQAALFSSAYASLCVEREGAAHAMPRYEEALERMQQHAELLHDTGNVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
APECO1_1076 YP_853096.1 carbohydrate kinase Not tested PAI IV APEC-O1 Protein 1e-51 46
orf408 NP_460347.1 regulatory protein Not tested SPI-2 Protein 1e-53 46
rbsk YP_216390.1 DeoR family transcriptional regulator Not tested SPI-2 Protein 4e-54 46
ORF 408 CAB37417.1 - Not tested SPI-2 Protein 9e-54 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_3859 YP_006284794.1 Ribokinase VFG0483 Protein 5e-54 46