Gene Information

Name : W5S_3564 (W5S_3564)
Accession : YP_006284506.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Phage transcriptional regulator, AlpA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3822805 - 3823008 bp
Length : 204 bp
Strand : -
Note : -

DNA sequence :
ATGTCATCATCTGAAAAATTATTGCGGTTGGCTGAGGTCAAGGGCCGCACAGGTTATAGCAAAGCGTGGATTTATAAACT
TATTGCGCAAAACCGCTTTCCTCAACCGATTAAGATTGGATCACGCTCTATAGCTTTTATTGAAAGTGAAATCGACGAGT
GGATTAATCAACGCATTGCTGAATCGCGCGGAGAGGTGGCGTAA

Protein sequence :
MSSSEKLLRLAEVKGRTGYSKAWIYKLIAQNRFPQPIKIGSRSIAFIESEIDEWINQRIAESRGEVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAA21398.1 - Not tested HPI Protein 3e-07 47
unnamed CAB46594.1 DNA-binding protein Not tested HPI Protein 2e-07 47
PMI2608 YP_002152324.1 prophage regulatory protein Not tested Not named Protein 4e-06 45
ECO103_3577 YP_003223438.1 transcriptional regulator Not tested LEE Protein 1e-06 42
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 8e-07 42
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 8e-07 42
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 6e-07 42
unnamed CAD33739.1 hypothetical protein Not tested PAI I 536 Protein 6e-09 41
c5192 NP_757040.1 hypothetical protein Not tested PAI II CFT073 Protein 9e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_3564 YP_006284506.1 Phage transcriptional regulator, AlpA VFG1118 Protein 2e-07 42
W5S_3564 YP_006284506.1 Phage transcriptional regulator, AlpA VFG1480 Protein 3e-09 41