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Name : W5S_3544 (W5S_3544) Accession : YP_006284486.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Unknown Product : DNA topoisomerase Function : - COG functional category : - COG ID : - EC number : - Position : 3809545 - 3811557 bp Length : 2013 bp Strand : - Note : - DNA sequence : GTGCGCCTCTTTATTTGCGAAAAACCCTCTCAAGCCAGAGACATTGCTGCTGTCATAGGAGCAACAAAGCGAGGACAAGG TTTTTTATCCGCTCCCGGGATAACCATAACCTGGGCTCGGGGGCACCTTTTAGAAACCGCTTCACCTGAAGTTTATGGCA CCCAGTTTGAGAAACCGTGGCGAATAGATGTGTTACCAGTTTTACCTCCCGTATGGCAGATGGTTGTTAAGCCAGAGTCG TTAGATCAGTTCACAGTCATCTCCCGATTGCTGAAGCAGGTTGATGAAGTGGTCATATCAACTGATGCTGACAGGGAAGG AGAAGTTATCGGATGGTCTCTTTTGGAATATTGCGGATGGAGAGGGCCTGTTTTTCGTTTGTGGCTGTCTGCATTGGATG AATCCAGCATTCGTACTGCATTAGCCGCTATCAAACCAGGAGCAGAAACAAAGCCGCTTTATTATGCAGGACTGGGGCGT TCGCGAGCGGACTGGCTAATAGGTATGAACCTGACCCGGCTTTATACCGTGAAAGCGAGGGATAAGGGATATGACGGACT TCTGTCTGTTGGGCGAGTGCAAACTCCCGTATTGGCGATGGTCGTTAATCGTGAGCGAGAAATAGCGGCGTTCGTCCCTA AACCTTACTGGCAAGTATGGGTAGCACTACAGTCTAATGGTGTCCGTTTCTCTGCGCAGTGGGTTCCTGCGAAAATGTAT GTCGATGAAGAGAAGCGCTGTATTCATCAGGGCATCGCTCAGCAAGTTGCACAGCTTTGTAAACAAACGGGCAAGGCAAC GGTCATTGAGCAGGAAACAAAGCGAGAAAAAGAGGCCGCGCCCTTGGCGTTCACCATGGGAACGCTGCAGCAGGCCTGCG GCAGACTTTGGGACATGAGTCCTCAGAAAGTGCTGGACATAGCACAGAGCCTGTATGAGACACATAAAGCAACGTCTTAT CCACGAACCGATTGTGGGTTTCTTCCTGAGTCAATGCGTGAGGAAATTCCTGATGTCCTGAGTGCATTGGTGAAAATCGA TCCCTCACTGCAGGAGTTGATTCCCCAGTTAGATACTCGCTTTGTTTCCCGCATATGGGACGATAAAAATATCACTGCCC ACCACGGTATTATCCCGACACGGCATGTATCTGACATGTCGAAGATGAGCGAGCAGGAAAAACAGGTTTACCTGCTGATC CGGAGACATTACCTCGCTCAGTTTTTACCGCTGCATGAAGTCGATGCTACGCGGCTTTCTCTGAATATCGGAGGCCAGCT GTTTCAGACAACGGGTCGGGTCGTTGTTGTTCCTGGGTGGAAACGTTTGTTTAGTCAGCAGGATGACGGTGAGCATAAAG AGTCGGCGGCGGATGAGAAAGATCAATCTTTACCTATGCTGGTAAAAGGAGATAACTGTGCTGTGACTGGCGCTGAGGTA AAGGCGCTGAAAACAAAGCCTCCCCAGTATTTTACCTTCCAATCTTTGATTGCGGCCATGATGAACGCTGCGGCGTATGT GACCGATTTAACATTGAAAAAAGTACTGAAAGAGAACGCAGGGTTAGGGACGGAAGCGACGCGTGGTGGGATTGTCGAAA CGTTACTTGCACGTAATTTCATCATCATAAAAGGTCGCTACTTGCGTGCAACAGATATTGCGATGGATCTTATCGACGCT TTACCTCACGCATTAAAGGAACCGGGTATGACGGCGCTTTGGGAGCAGGCGCTCGATGAGGTTGCTAAAGGGAAAATGAC ACTGGATAACTTTATGTCCCGGCAAACTCAGTGGATTTGTCAGCTTGTTTCCCTGGGCGCTCAACAAGATGTTGTCGTTC GCGTTCCTCCTACGCCTGCTTGCCCGCTTTGTGGTAGTAAGACGCGGTTACGAAAAGGGGTAAAGGGATCGTTTTATGGT TGTGAGAAATATCCTGACTGTAAGGGGATGATTAACATCCCTGGCCAAGGCAAGAATACGGCACCTAAAACACGGAAGAA AAAGCAGAATTAA Protein sequence : MRLFICEKPSQARDIAAVIGATKRGQGFLSAPGITITWARGHLLETASPEVYGTQFEKPWRIDVLPVLPPVWQMVVKPES LDQFTVISRLLKQVDEVVISTDADREGEVIGWSLLEYCGWRGPVFRLWLSALDESSIRTALAAIKPGAETKPLYYAGLGR SRADWLIGMNLTRLYTVKARDKGYDGLLSVGRVQTPVLAMVVNREREIAAFVPKPYWQVWVALQSNGVRFSAQWVPAKMY VDEEKRCIHQGIAQQVAQLCKQTGKATVIEQETKREKEAAPLAFTMGTLQQACGRLWDMSPQKVLDIAQSLYETHKATSY PRTDCGFLPESMREEIPDVLSALVKIDPSLQELIPQLDTRFVSRIWDDKNITAHHGIIPTRHVSDMSKMSEQEKQVYLLI RRHYLAQFLPLHEVDATRLSLNIGGQLFQTTGRVVVVPGWKRLFSQQDDGEHKESAADEKDQSLPMLVKGDNCAVTGAEV KALKTKPPQYFTFQSLIAAMMNAAAYVTDLTLKKVLKENAGLGTEATRGGIVETLLARNFIIIKGRYLRATDIAMDLIDA LPHALKEPGMTALWEQALDEVAKGKMTLDNFMSRQTQWICQLVSLGAQQDVVVRVPPTPACPLCGSKTRLRKGVKGSFYG CEKYPDCKGMINIPGQGKNTAPKTRKKKQN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 60 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 0.0 | 60 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 0.0 | 60 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 0.0 | 55 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 2e-173 | 51 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 4e-174 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 5e-161 | 50 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 8e-161 | 49 |
