Gene Information

Name : W5S_3542 (W5S_3542)
Accession : YP_006284484.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Single-stranded DNA-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3807795 - 3808343 bp
Length : 549 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTTCACGTGGCGTAAATAAAGTAACACTTATCGGATTTTTGGGACAGGATCCTGAAGTTCGTTATATGCCAAATGG
TAACGCAGTTACTGGTATTACTATGGCAACGTCAGAAACCTGGCGCGATAAACAAACTGGCGAAGAAAAAGAGCGTACTG
AATGGCACCGTGTGGTGATATTCGGCAAGCTTGCAGAAATCGCCGGAGAGTATTTGCGTAAAGGGTCTCAGGTTTACATT
GAAGGGCAACTTCAAACACGTAAGTGGCAAGACAGTGCGGGTGTAGATCGTTGGACGACCGAAATTGTAGTCAGCCAGCG
TGGCACGATGCAGATGTTAGGATCTCGCCCGAACGATGGAAATAACAATCAAAGTGCAGCCAATACTGCATGGGGAAAAC
CTCAGCAGCCAACTGCACCGGCGCAGAGTGGTACGCCTCAGTCTCAACGTCCAGCAGGTAATGAACCGCCAATGGACTTC
GACGACGATATACCGTTTCTTGGGTTTGGTTATGGTGTATGTCGCAAAGCGATTTATGCCATTTCGTAA

Protein sequence : 
MASRGVNKVTLIGFLGQDPEVRYMPNGNAVTGITMATSETWRDKQTGEEKERTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDSAGVDRWTTEIVVSQRGTMQMLGSRPNDGNNNQSAANTAWGKPQQPTAPAQSGTPQSQRPAGNEPPMDF
DDDIPFLGFGYGVCRKAIYAIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssB NP_458627.1 single strand binding protein Not tested SPI-7 Protein 7e-54 68
ssb NP_807839.1 single-stranded DNA-binding protein Not tested SPI-7 Protein 7e-54 68
ssb AAF14810.1 single strand binding protein Not tested SPI-7 Protein 5e-54 68
ssb AAC26638.1 single-strand binding protein Not tested SPI-4 Protein 1e-34 55
ssb1 YP_005176252.1 single-stranded DNA-binding protein Not tested ICEPmu1 Protein 3e-31 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_3542 YP_006284484.1 Single-stranded DNA-binding protein VFG0576 Protein 2e-42 62