Gene Information

Name : W5S_3468 (W5S_3468)
Accession : YP_006284410.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Resistance
Product : Arsenical pump membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3742103 - 3743392 bp
Length : 1290 bp
Strand : -
Note : -

DNA sequence : 
ATGTGGCTGGCTGCAGCTATTTTTATTCTGACCATTGTACTGGTCATCTGGCAACCCCGTGGACTGGGAATAGGCTGGAG
CGCGATGCTTGGAGCCTTACTCGCACTGATTACAGGTGTGGTTCACCCCGGTGATATTCCGATCGTCTGGCATATTGTCT
GGAATGCGACGGCAGCGTTCATTGCGGTCATTATTATCAGTCTGTTACTCGACGAATCAGGTTTCTTTGAATGGGCAGCT
CTGCACGTCGCACGCTGGGGGAATGGCCGCGGACGATGGCTGTTTACCTGGATTATTTTACTGGGTGCTGCGGTCGCGGC
GCTGTTTGCCAACGACGGTGCGGCGCTCATCCTGACACCAATCGTTATAGCCATGTTACTCGCACTGGGGTTCAGTAAAG
CCACCACGCTGGCGTTCGTCATGGCGGCAGGATTTATTGCGGACTCCGCCAGCCTGCCACTCATTGTTTCGAACCTGGTG
AACATTGTCTCTGCTGATTTCTTTAAGCTCGGGTTTAATGAATATGCATCTGTTATGGTGCCGGTTGATATCGCAGCCAT
TATTGCCACCCTGGTGATGCTGCATCTGTATTTCCGAAAAGATATTCCCGCAACCTATGAAATTTCGCGCCTCAAAGCGC
CGGAAGAGGCTATCCGCGATCGGAATACCTTCCGGACAGGCTGGGGGGTTCTGGCTCTTTTGCTGCTCGGATTCTTTGGC
CTGGAACCCCTGGGGATCCCCGTCAGCGCGGTTGCCGCCGTCGGTGCTCTCATCCTGTTTCTGGTCGCCAAAAAAGGACA
TGCGATTAATACCGGAAAGGTGCTTCGCGGAGCCCCCTGGCAGATTGTGATTTTCTCCCTGGGTATGTATCTGGTGGTCT
ACGGGCTGCGTAATGCCGGACTGACTGACTACCTGTCATCTGTGCTTAATCAGTTTGCCAGCCAAGGGTTGTGGGTGGCA
ACGCTGGGCACGGGCTTCCTGACCGCCTTCCTCTCCTCGATCATGAATAACATGCCAACCGTCCTGGTGGGTGCACTGTC
TATTGATGGCAGTACCGCGACCGGGGTGATTAAAGAGGCCATGATTTACGCCAATGTTATTGGCAGCGACCTGGGGCCCA
AAATCACCCCGATAGGCAGTCTGGCCACCCTGCTGTGGCTACATGTGCTGGCGCAGAAAGATATCCGGATCTCCTGGGGA
TATTACTTCCGGGTCGGCATCGTCATGACCCTGCCCGTGCTGTTTGTGACACTGGTTGCCTTGACATTACGTTTATCTGT
TTCGTTCTGA

Protein sequence : 
MWLAAAIFILTIVLVIWQPRGLGIGWSAMLGALLALITGVVHPGDIPIVWHIVWNATAAFIAVIIISLLLDESGFFEWAA
LHVARWGNGRGRWLFTWIILLGAAVAALFANDGAALILTPIVIAMLLALGFSKATTLAFVMAAGFIADSASLPLIVSNLV
NIVSADFFKLGFNEYASVMVPVDIAAIIATLVMLHLYFRKDIPATYEISRLKAPEEAIRDRNTFRTGWGVLALLLLGFFG
LEPLGIPVSAVAAVGALILFLVAKKGHAINTGKVLRGAPWQIVIFSLGMYLVVYGLRNAGLTDYLSSVLNQFASQGLWVA
TLGTGFLTAFLSSIMNNMPTVLVGALSIDGSTATGVIKEAMIYANVIGSDLGPKITPIGSLATLLWLHVLAQKDIRISWG
YYFRVGIVMTLPVLFVTLVALTLRLSVSF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
arsB2 YP_001007633.1 arsenical pump membrane protein Not tested YAPI Protein 2e-159 86
arsB YP_252017.1 arsenical pump membrane protein Not tested SCCmec Protein 1e-107 59
arsB YP_005754065.1 arsenical pump membrane protein Not tested Type-XI SCCmec Protein 1e-105 58
SH0109 YP_252024.1 arsenical pump membrane protein Not tested SCCmec Protein 5e-111 58

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_3468 YP_006284410.1 Arsenical pump membrane protein BAC0578 Protein 1e-159 88
W5S_3468 YP_006284410.1 Arsenical pump membrane protein BAC0576 Protein 2e-158 87
W5S_3468 YP_006284410.1 Arsenical pump membrane protein BAC0031 Protein 2e-161 86
W5S_3468 YP_006284410.1 Arsenical pump membrane protein BAC0577 Protein 7e-156 84
W5S_3468 YP_006284410.1 Arsenical pump membrane protein BAC0575 Protein 2e-110 59
W5S_3468 YP_006284410.1 Arsenical pump membrane protein BAC0574 Protein 2e-107 59