Gene Information

Name : W5S_3104 (W5S_3104)
Accession : YP_006284056.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : DUF523 and DUF1722 domain-containing protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3339904 - 3340863 bp
Length : 960 bp
Strand : -
Note : -

DNA sequence : 
ATGACGCTCGAACTCATCCCTGTTGGTATCAGCGCCTGTCTGCTCGGTAATCCCGTGCGGTTTGATGGTGGACACAAGCG
TCTGACGTTTGCCGCTGAACAACTGGCACCCTATTTTCGTTTTGAGCCGGTCTGCCCGGAAATGGCGATTGGTTTACCGG
TGCCGCGTCCTGCGCTCAGGCTGGTGCGCGAAGGAGAGAGCCACATCACACTACGCGCCAGTAATGGCTCGCCTCTGGAT
GTCACCCAGCAAATGACGGTGTTTTCCGCTGACAAAGTGAGCGAACTTCAGCACTTATGCGGGTATATCGTCTGCGCTAA
ATCACCAAGTTGTGGCATGGAGCGCGTGAAGGTTTACGATGAAGCGCAAAAGGATGCGCGTAAAAGCGGAATCGGCCTGT
TTACGCAGGAGTTGATGCGGCAAATGCCCTGGCTGCCGGTTGAGGAAGATGGGCGCCTGCAAGATCCTGGCTTGCGGGAA
AATTTCATTGAACGCGTTTATGCGCTGCACGAACTGAATCAGCTATGGCAAAACGGGCTGAGCCGTGGCGCGCTTATTGC
CTTTCATAGCCGCTATAAATTACTGCTGTTGGCGCACTCCCAACCGGAATACCGCGAGCTGGGGCCGTTTGTTGCGGGGA
TCGATAAGTGGGAATCGCTGGAAGACTATATTGTTGAATACCGGATAAGGTTGATGAAACTGCTATCGACGCCTGCGACG
CGACGCAATCACACCAATGTGCTGATGCATGTGCAGGGGTACTTCCGACGCCAGCTAAATTCTCAACAGCGACAGGAACT
GGCGCAGCTTATCGATCGCTATCGACAGGGTTTGCAGCCGCTATTGGCACCTATCACATTGCTAAAACATTATATGGCGG
AATACCCCGATGCGTATCTGGCCCAGCAGCGTTACTTTGAGCCGTACCCGGAAGCATTGCGCCTGCGTTATGGACACTAA

Protein sequence : 
MTLELIPVGISACLLGNPVRFDGGHKRLTFAAEQLAPYFRFEPVCPEMAIGLPVPRPALRLVREGESHITLRASNGSPLD
VTQQMTVFSADKVSELQHLCGYIVCAKSPSCGMERVKVYDEAQKDARKSGIGLFTQELMRQMPWLPVEEDGRLQDPGLRE
NFIERVYALHELNQLWQNGLSRGALIAFHSRYKLLLLAHSQPEYRELGPFVAGIDKWESLEDYIVEYRIRLMKLLSTPAT
RRNHTNVLMHVQGYFRRQLNSQQRQELAQLIDRYRQGLQPLLAPITLLKHYMAEYPDAYLAQQRYFEPYPEALRLRYGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 2e-95 60
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 2e-95 60
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 2e-95 60
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 4e-95 60
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 3e-95 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_3104 YP_006284056.1 DUF523 and DUF1722 domain-containing protein VFG0490 Protein 1e-95 60