Gene Information

Name : W5S_2424 (W5S_2424)
Accession : YP_006283384.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Type VI secretion protein, VC_A0110 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2609215 - 2611089 bp
Length : 1875 bp
Strand : -
Note : -

DNA sequence :
ATGGACAGCAAACTGCTCGATTACTACAACCGTGAGCTCGCTTATTTGCATGAAATGGGCGCGGAGTTTGCTGCGCACTA
TCCCAAAGTGGCAGGGCGTCTGGGCATGCGAGGGATCGATGTCGCCGACCCTTACGTTGAACGAATGCTGGAAGGTTTTG
CCTTCCTCACTTCGCGTGTTCAACTGAAAATGGACGCTGAATTTCCGCGTTTTTCGCAGCGTATGCTGGAAATGATCGCG
CCTGGTTACTTATCGCCAACGCCGTCAATGGCCATTGCCAAACTGACGCCAGATACGCAAAAAGGCGACATCAGCAATGG
TTTCCTCGTGCCACGCGGCACCATGATGGAAAACCAAAATCTGAAAAAAAGCGGCGTCACCTGTAGCTACACCACGGCAC
ATGACGTGATGCTGCAACCGTTATGCCTCAGCGATGTCTCGCTCGGCGGTGTACCGGCTGATATCCCTTTGGGTGAACTA
AAACTGAGCGGCCTCGGTGCCGCCAGTGCATTGCGGATCCGTATTGAATGTGAAGGTGTTCCGTCGTTAGACCAGCTTAA
GCTGGATGATGTAATACTGTACCTGAGTGGCCCGGATATCCAGGCGCTGAAGCTGTTGGAATTATTGATGCAGCATCGTG
TCGGCATCCTGTTGCAATCCGTGGAAGAAAAGCCGCTGCGCCGGGTGTTAAGCGATGATGCGCTACAGCAGGAAGGGTTT
GCACCAGAGCAGGCGTTGCTGCCAGACGACCTGCGTAACTTCGATGGCTATCGCCTGTTGCAGGAGTATTTTGCTTTTCC
TGCCCGTTTCCAGTTCATCAGTTTAAGGCAGTTAGCGCCGTTCATTCGCTGCTGTGGCAACGCCCGAATCTTTGAAATTA
TTATCTTGCTGGATAAAGCCGACAGCGCACTAGAGAGTGTGGTGGATGCCAGTCATCTGGCATTACATTGCACCCCCGTC
ATTAATCTGTTCCCGAAAACCGCTGAACGTTTAAAGATCAGCGACAGCCAACACGAGTACCACTTGGTGGTCGATAATAT
CCGTCCACTGGATTATGAAGTGCATTCGGTTCAGCGACTATTTGCCACGGTGGAAGGGAAACGAGAGGAGCAGATTTTCC
GCTCTTTCTGGAGCACCTTCAGTGGCGATGGAAGCGATTACGGTGCCTATTTTTCGCTGCGGCGCGAGCAGCGCACGCTG
TCCGAACAGGCGCAGCGCTATGGCACACGCACTGGCTACATCGGTTCGGAAGTTTTCCTGTCGCTGGTCGATGAGCACCA
TACGCCGTGGCGTGATGACCTGCGTTATCTATCGGCAGACGTGATGTGTACCAGCCGTGATTTACCACTCATGCTATTAC
AGCAGGATCAGGGCAACTTCGTGATGCCAGATTCGATCCCGGTGGGGCCGTTGACGTTGTGCAAAGGCCCAACGCCACCG
CGTCCGGCGCTAGCAGAAGGCCTCTCATCCTGGCGGCTGATTAGCCATCTGCAAATGAATTACCTCAGTCTGATGGACTG
CGCCGGCGGTGAAGGCGCTGCAGCATTGCGCCAGCTACTTAGCCTGTACGCCAACTTAGCCGATGCGCCAGTGTCACGCC
AAATAGAAGCCATCCGCCATTGCCAGCTCAGCACCGTCAACCGCCGTGTACCTGAACCGGGGCCCGTAGTGTTTGCACGG
GGTGTCAGTATCACGCTGGAGGTCGATGAACAGGCGTTTTCCGGTGCAAGCCCGTGGCTATTTGGCAGCGTCTTGGAACG
CGTTTTCTCTCGACTGGTTGCGCTAAACAGTTTCACTGAATTTACCCTGAACAGTCAGCAGCGTGGCGAAGTCGGTTACT
GGCCGCCTCGCATGGGCAAGAAGGCGTTGATATGA

Protein sequence :
MDSKLLDYYNRELAYLHEMGAEFAAHYPKVAGRLGMRGIDVADPYVERMLEGFAFLTSRVQLKMDAEFPRFSQRMLEMIA
PGYLSPTPSMAIAKLTPDTQKGDISNGFLVPRGTMMENQNLKKSGVTCSYTTAHDVMLQPLCLSDVSLGGVPADIPLGEL
KLSGLGAASALRIRIECEGVPSLDQLKLDDVILYLSGPDIQALKLLELLMQHRVGILLQSVEEKPLRRVLSDDALQQEGF
APEQALLPDDLRNFDGYRLLQEYFAFPARFQFISLRQLAPFIRCCGNARIFEIIILLDKADSALESVVDASHLALHCTPV
INLFPKTAERLKISDSQHEYHLVVDNIRPLDYEVHSVQRLFATVEGKREEQIFRSFWSTFSGDGSDYGAYFSLRREQRTL
SEQAQRYGTRTGYIGSEVFLSLVDEHHTPWRDDLRYLSADVMCTSRDLPLMLLQQDQGNFVMPDSIPVGPLTLCKGPTPP
RPALAEGLSSWRLISHLQMNYLSLMDCAGGEGAAALRQLLSLYANLADAPVSRQIEAIRHCQLSTVNRRVPEPGPVVFAR
GVSITLEVDEQAFSGASPWLFGSVLERVFSRLVALNSFTEFTLNSQQRGEVGYWPPRMGKKALI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0289 NP_454871.1 hypothetical protein Not tested SPI-6 Protein 8e-120 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2424 YP_006283384.1 Type VI secretion protein, VC_A0110 family VFG2074 Protein 3e-126 45