Gene Information

Name : W5S_2153 (W5S_2153)
Accession : YP_006283114.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Periplasmic chelated iron-binding protein YfeA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2340525 - 2341439 bp
Length : 915 bp
Strand : -
Note : -

DNA sequence : 
ATGATTGGTTTTCACACCCTTTTATCTGCCTTGTTCCGCCGTATTGCGCTATCGTGCGCCTTGCTGCTTTTAGCCAGCAC
ATCCGTTCAGGCAACTGAAAAACTAAAAGTTATCACCACCTTTACCATTATTCAGGATATCGCCCAAAACATCGCTGGCG
ATGCTGCAACGGTTGAGTCCATAACCAAACCGGGTGCAGAGATTCATGATTATCAACCAACACCACGCGACATCGTTAAA
ACACAATCTGCACAACTGGTGCTGTGGAACGGTATGAACCTTGAGCGCTGGTTTACGCGCTTTTTTGAAAATGTCAAAAA
TGTGCCCGCCGTCGTGGTGACGGAAGGCATTACGCCGCTCCCTATTCGCGAAGGTGCCTATAATGGCAATCCGAATCCGC
ATGCCTGGATGTCCCCTTCCAATGCGTTAATTTATATTGAAAACATTCGCAAAGGTTTGGTTCAAGCCGATCCTGCTAAT
GCAGAGACCTATAACCGTAACGCCAAGGCCTATGCGGAAAAAATTAAGGCACTTGATGCACCACTGCGTGAGCGCCTCTC
CCGCATTCCAGAGCAGCAACGTTGGTTGGTCACCAGTGAAGGCGCATTTAGCTATCTGGCGAAGGATTATCAATTCAATG
AAGTCTATCTCTGGCCAATCAATGCCGACGAACAAGGTTCACCGCAGCAGGTACGTCGGGTGATTGATACCGTGCGTGAA
AAGGCAATCCCTGTGGTGTTTAGTGAAAGCACCATTTCCGATAAGCCCGCAAAACAGGTCAGCAAAGAAACAGGGGCGAA
ATATGGTGGCGTGCTGTATGTTGATTCTCTGTCTACGGAAAAAGGCCCCGTGCCGACCTATATCGACCTGTTACAAGTGA
CGGTGGAAACCATCGCGAAAGGATTTAATCAATGA

Protein sequence : 
MIGFHTLLSALFRRIALSCALLLLASTSVQATEKLKVITTFTIIQDIAQNIAGDAATVESITKPGAEIHDYQPTPRDIVK
TQSAQLVLWNGMNLERWFTRFFENVKNVPAVVVTEGITPLPIREGAYNGNPNPHAWMSPSNALIYIENIRKGLVQADPAN
AETYNRNAKAYAEKIKALDAPLRERLSRIPEQQRWLVTSEGAFSYLAKDYQFNEVYLWPINADEQGSPQQVRRVIDTVRE
KAIPVVFSESTISDKPAKQVSKETGAKYGGVLYVDSLSTEKGPVPTYIDLLQVTVETIAKGFNQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-91 65
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-91 65
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 2e-91 65
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-91 65
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-91 65

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2153 YP_006283114.1 Periplasmic chelated iron-binding protein YfeA BAC0439 Protein 2e-112 83
W5S_2153 YP_006283114.1 Periplasmic chelated iron-binding protein YfeA BAC0349 Protein 1e-91 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2153 YP_006283114.1 Periplasmic chelated iron-binding protein YfeA VFG0525 Protein 9e-92 65