Gene Information

Name : W5S_2152 (W5S_2152)
Accession : YP_006283113.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein YfeB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2339638 - 2340528 bp
Length : 891 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTCGTGATCGAACAAAGCAGTCACTAGAAGTCAATGATGTTTCGGTTACTTACAGCAACGGACATCAGGCTATTCG
CCACGCCTCTTTTTCTCTGGCTGGCGGTACGATTTGCGCTCTGGTCGGCGTAAATGGTAGCGGAAAATCCACGTTATTCA
AAAGCATCATGGGGTTAGTCAAGCCAACCTCAGGGCAGGTACTGCTCAATCAGCACCCCATCTACCAGGCGTTAAAACAG
AATCTGGTTGCCTACGTTCCACAAACAGAGGATGTGGACTGGAATTTTCCCGTTCTGGTTGCCGACGTGGTCATGATGGG
CCGCTACGGGCGGATGAACTTCCTGCGTATCCCCAGTAAACAAGACCGCGCGATTGTAGCCGAATCATTGGAGCGCGTCG
GGCTGTCGACGCTGCAACATCGCCAAATTGGGGAACTGTCCGGAGGCCAGAAAAAGCGCGTCTTTCTGGCCCGTGCGTTA
GCGCAACAAGGCAGCGTTCTGCTGTTGGATGAGCCTTTTACGGGGGTCGACGTCAAAACGGAGAATGCCATCATCGAGCT
ACTTCGCACCTTGCGCGACGAAGGGCATTTGATTCTGGTAGCAACCCACAACCTCGGCAGCGTTCCCGAGTTTTGCGACA
ATGTTATTTTGGTCAATCGCACCGTGTTAGCCGCTGGGCCGACACACAGCACCTTTACCCAAAGTAATTTGGAGAAAACG
TTCGGGGGCGTCCTGCGACACATCAACCTCGGGGGAGCACATCTTCACGACGACGACGACGTTCGCTCGGTGACGGTATT
AACCGACGATGAACGTCCTGCGGTGTTCTATGGTTCGACTAAAAGCGACCCTCCTGCGTCACGCACGATACCGGAGGAGA
AGAACCCCTGA

Protein sequence : 
MSRDRTKQSLEVNDVSVTYSNGHQAIRHASFSLAGGTICALVGVNGSGKSTLFKSIMGLVKPTSGQVLLNQHPIYQALKQ
NLVAYVPQTEDVDWNFPVLVADVVMMGRYGRMNFLRIPSKQDRAIVAESLERVGLSTLQHRQIGELSGGQKKRVFLARAL
AQQGSVLLLDEPFTGVDVKTENAIIELLRTLRDEGHLILVATHNLGSVPEFCDNVILVNRTVLAAGPTHSTFTQSNLEKT
FGGVLRHINLGGAHLHDDDDVRSVTVLTDDERPAVFYGSTKSDPPASRTIPEEKNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-81 62
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-81 62
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-82 61
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-82 61
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-81 61

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2152 YP_006283113.1 Chelated iron transport system membrane protein YfeB BAC0440 Protein 5e-112 78
W5S_2152 YP_006283113.1 Chelated iron transport system membrane protein YfeB BAC0350 Protein 3e-82 61
W5S_2152 YP_006283113.1 Chelated iron transport system membrane protein YfeB BAC0400 Protein 1e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2152 YP_006283113.1 Chelated iron transport system membrane protein YfeB VFG0526 Protein 3e-82 61