Gene Information

Name : W5S_2151 (W5S_2151)
Accession : YP_006283112.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein YfeC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2338775 - 2339638 bp
Length : 864 bp
Strand : -
Note : -

DNA sequence : 
ATGATCGATATCCTGCTGCAGCCATTCAACTATAACTACATGGTCAAGGCGATCTGGGTCAGCGCGATTGTCGGTGGCGT
ATGCGCTTTTCTTTCCGCGTACCTAATGCTGAAAGGTTGGTCGCTGATGGGTGATGCGCTCTCACACTCCGTCGTTCCCG
GCGTTGCGGGGGCCTATGCATTGGGCCTACCCTACGCAGCCGGCGCATTTTTTACTGGTATGCTCGCTGCGCTGGCGATG
ACCCTCATCCGTCACATTACCCGATTGCGCGAAGATGCGATTATCGGTTTTATTTTCTCAACGTTTTTTGCTGTCGGCCT
GCTGATTATTTCGCTCAACCCAACATCGGTTAACGTGCAATCCATCATTTTCGGCAATATTTTGGGTATTGCCGACGAAG
ATATCCTGCAAGTTGAGATCATCATCGGCGTGACGTTCGTGATCCTCTGTCTGCTGTGGAAGGATCTGCTGGCCGTGTTT
TTTGATGAGAACCATGCTCGTTCTATTGGCCTTTCCCCGCTGAAGCTGAAAATTCTGTTCTTTACGCTGCTGAGCGCCTG
TACTGTCGCGGCATTGCAAACCGTCGGCGCGATTTTGGTGATCGCGATGGTGATCACGCCGGGAGCCACGGCTTACCTGC
TTACCGACCGGTTTGGTCGCCTGGTTGTGATTTCCATTGTGCTTGGTGCACTAACCAGTGCGGTGGGAGCCTATCTGAGC
TTTTTCCTTGATGGTGCGACTGGCGGCGTGATTGTCACGTTGCAAACCGTTGTCTTCCTGTTGGCATTTGTCTTCGCCCC
CAAGCATGGATTACTGGCATCACGCCGGCTGCGATTGCGCGATCAATCAGGAGATGCTTTATGA

Protein sequence : 
MIDILLQPFNYNYMVKAIWVSAIVGGVCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYALGLPYAAGAFFTGMLAALAM
TLIRHITRLREDAIIGFIFSTFFAVGLLIISLNPTSVNVQSIIFGNILGIADEDILQVEIIIGVTFVILCLLWKDLLAVF
FDENHARSIGLSPLKLKILFFTLLSACTVAALQTVGAILVIAMVITPGATAYLLTDRFGRLVVISIVLGALTSAVGAYLS
FFLDGATGGVIVTLQTVVFLLAFVFAPKHGLLASRRLRLRDQSGDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-76 67
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-76 67
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-76 67
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-76 67
sitC NP_461784.1 permease Virulence SPI-1 Protein 4e-76 67
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 3e-41 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-41 42
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-41 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-41 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 4e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2151 YP_006283112.1 Chelated iron transport system membrane protein YfeC BAC0441 Protein 5e-101 89
W5S_2151 YP_006283112.1 Chelated iron transport system membrane protein YfeC BAC0351 Protein 2e-76 67
W5S_2151 YP_006283112.1 Chelated iron transport system membrane protein YfeC BAC0352 Protein 2e-41 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2151 YP_006283112.1 Chelated iron transport system membrane protein YfeC VFG0527 Protein 2e-76 67
W5S_2151 YP_006283112.1 Chelated iron transport system membrane protein YfeC VFG0528 Protein 2e-41 42