Gene Information

Name : W5S_2150 (W5S_2150)
Accession : YP_006283111.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Chelated iron transport system membrane protein YfeD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2337921 - 2338778 bp
Length : 858 bp
Strand : -
Note : -

DNA sequence : 
ATGATGCTAATTAGCTGGCTAACCGATCCCCTGTCTTATCCATTCATGCAGCGAGCATTACTCGCCGCCGTCGTCACGGG
TACGGTTTGCGCGGTACTGTCCTGCTATCTGGTGCTGAAAGGCTGGTCGCTAATGGGCGATGCCATTTCTCATGCCGTAT
TGCCCGGTATCGTTGTCGCGTTTCTACTGGGAATTCCGCTGGTCATTGGCGCTTTTGTTTCCGGTATTTTTTGTGCGATA
GCAACGGGATATGTGAAAGAGCACAGCCGGGTCAAAGAAGATACGGTAATGGGGATCATATTTTCCGGCATGTTTGCGCT
GGGGCTCGTCATGTTTGCACGCATCGATACCGATCAGCACCTGAACCATATTCTGTTTGGTAACGTGCTAGGCATCACCC
GGCAAGAACTGACGCAAATATTGCTGATTGCGGGAGTGACATTGGCCGTCATTTTGTTAAAACGGCGAGATTTCATGTTG
TATTGCTTCGATCCCAATCATGCCCGCATCATTGGCCTGCCCGTTAAGCTGCTGCACTACGGATTACTGAGCCTACTGGC
AATGACCATCGTGGCATCATTACAGGCCGTCGGCGTTATTTTGGTGATCGCGATGCTGATTGCGCCAGGGATCATTGCTT
TTATGGTCTGTAAACGTTTCGAGCGTATGGTGCTTGTCGCCACGCTAGTTTCCGTCATTTCCTGTATTGCTGGCACCCTG
ATCAGTTTTTATATCGATGGTGCGACGGGCCCTTGTATCGTGATTGTTCAGGCACTGTTCTTCACGTTAGCCCTGATTTA
CCACCAGCTTAAACTGCGTCGTCAAGCAGCATCTCAGATTGCCAGCGACGCGCTGTAG

Protein sequence : 
MMLISWLTDPLSYPFMQRALLAAVVTGTVCAVLSCYLVLKGWSLMGDAISHAVLPGIVVAFLLGIPLVIGAFVSGIFCAI
ATGYVKEHSRVKEDTVMGIIFSGMFALGLVMFARIDTDQHLNHILFGNVLGITRQELTQILLIAGVTLAVILLKRRDFML
YCFDPNHARIIGLPVKLLHYGLLSLLAMTIVASLQAVGVILVIAMLIAPGIIAFMVCKRFERMVLVATLVSVISCIAGTL
ISFYIDGATGPCIVIVQALFFTLALIYHQLKLRRQAASQIASDAL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-67 52
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-67 52
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-67 51
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-67 51
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-67 51

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2150 YP_006283111.1 Chelated iron transport system membrane protein YfeD BAC0442 Protein 1e-104 79
W5S_2150 YP_006283111.1 Chelated iron transport system membrane protein YfeD BAC0352 Protein 7e-68 52
W5S_2150 YP_006283111.1 Chelated iron transport system membrane protein YfeD BAC0441 Protein 4e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_2150 YP_006283111.1 Chelated iron transport system membrane protein YfeD VFG0528 Protein 7e-68 52