Gene Information

Name : W5S_1876 (W5S_1876)
Accession : YP_006282838.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Colicin I receptor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2031926 - 2034055 bp
Length : 2130 bp
Strand : +
Note : -

DNA sequence :
ATGAAAGGAAATTCTCTGATTAATCTCAAAAATGCAGTGGCTTTGGCATTGGCGGCAACAGCAGCAAACGCAGCGATCGC
GGCAGGTAATAATGATGTACTGGTGGTCACCGCGAGTGGTTATGAGAAAAAATTGACGAATGCACCAGCTTCTATCTCGG
TCGTCAGCGAAGAAGAACTCTCACAAAAAAGTTATCACGATCTGGGCGAGGCGTTAAGCGGTGTGGAAGGCGTTGATGTA
CGCAGCGGAACGGGTAAAACCGGCGGACTGGACATTAGCATCCGCGGTATGCCTAGTAGTTACACTCTAATCCTGATCGA
TGGCGTGCGTCAGAACGCCAGCGGAGATGCAACGCCGAACGGCTTTGACACCATGAATACGGCGGTGATGCCGCCGCTGT
CAGCGATTGAACGTATTGAGGTGATTCGCGGACCGATGTCGACGCTATATGGCTCTGATGCGATTGGCGGAGTGGTCAAC
ATTATCACCAAGAAAGACAGCAAGCAGTGGCGTGGCAGCGTTAATCTGTCACATACAGTACAGGAACACCGTAAATGGGG
CGACAGTTCCACGCTGGGGATCTATGCTTCTGGACCATTGGCGAATGATAAATTTAGTTTGGCATTGCGCGGTAATCTGG
AGCATCGTCAGGGATCCAGCGTAACCTCGCTAAGCGATAGCGGTGACACCCGTGTTCCGTTCCCGACCAAAACCGACAAC
TATAATGTCGGTGCCAAGCTGAGCGCGAAGACCAGTGATGCCAATACCCTGTGGGTTGACGGCGATGTATCACGTCAGAC
TTACGATAACCGCAGTAGCCAACTGGGCCCGATTGGCGTTGGCGGCGGTGGATACCGTGATGAGCTACGATTTGAGCGTA
ATAAACTGTCCATTGGACACGATACCGATCTGTCGTTTGGTCGTTGGAGCTCAAACCTGTCATATGCAGTGACTGAGAAC
AAAGGACGCCTGCTGACACCAGCAACGCTAACTCCCTCCAACAGCGGCTTATCTGGGCGCGATCGTACACTGAAAAATAC
CAATACGATCCTTGATACCAGCCTGGTTTCTCCTCTGGGAGATAGCCACCTGCTGACGGTTGGCGGTCAATATTGGGATG
CGAGCGTTAAAGATGGCATTGTACTGGCAAACAGTGGCGAAACGTTCGAACAAAAAAGCTGGTCGCTGTATGCGGAAGAT
GATTGGCAACTACTCGATCCGCTGTCTCTGACGTTAGGCGCTCGCTATGAGAAACACGATAGCTTCGGTGGTCATTTGAG
TCCACGTGCCTATCTGGTATGGAACGTGGCGGATGACTGGACGGTAAAGGGTGGTGTCAGTACCGGATACAAAGCCCCTT
CGCTAGCGCAATTACATAATGGTGTCAGTGGGGTAGCAAAGAATGGTACTGCAATGACCATAGGAAACCCGAATCTTAAG
CCAGAAGAAAGCACTAACTTTGAGACAGGGCTGTATTATGGGAACGATGCGAACGTAAACGCCAATATTACTGGCTTTGT
AAACCATTATAAGAATGCTATCGGTTCGCTAGATATCACCCCTTCAGAGGGAAGCTATCGCAACATTGGTAAAGCGAGAA
CGCAAGGTATTGAATTTGCAACGTCTTTCCCTGTGGTTGTTCCAGAGTTAACGCTGGAACTAAATTATACCTACACGCAC
AGTGAACAAATTGGTGGAAAGAATCCCGGCGCGGCGTTAACGACAACGGCTAAGCACATGGCGAATGCTCGTCTGAATTG
GCAGATCGATGAACAGTGGAATAGCTGGCTGGCGGCAGAATACCGAGCGAAGACACCGCGTTTCACCGACAATTATGCGA
ATCTCAATACCACTCAAAAGTTGGTGTATGACGATCGTGGTGCCGACCTCAAGGCTTGGACCGTGGTGAATTTAGGAACT
TCCTACAAAGTGACGAAAGATGTCACCTTAAATGGTACGGTAAATAATCTGCTGGATAAGGATTTCTCGGATGTCCGTCC
ATATACTACTATCATAAATAATCGGCCTAACACCTACTATGCGGGGGATTACTTCGACTCCAGTCGTTCTACGACGGGTT
ATGTCACGCCAGGCCGTAACTACTGGGTGTCAGTCAACGTCAACTTCTGA

Protein sequence :
MKGNSLINLKNAVALALAATAANAAIAAGNNDVLVVTASGYEKKLTNAPASISVVSEEELSQKSYHDLGEALSGVEGVDV
RSGTGKTGGLDISIRGMPSSYTLILIDGVRQNASGDATPNGFDTMNTAVMPPLSAIERIEVIRGPMSTLYGSDAIGGVVN
IITKKDSKQWRGSVNLSHTVQEHRKWGDSSTLGIYASGPLANDKFSLALRGNLEHRQGSSVTSLSDSGDTRVPFPTKTDN
YNVGAKLSAKTSDANTLWVDGDVSRQTYDNRSSQLGPIGVGGGGYRDELRFERNKLSIGHDTDLSFGRWSSNLSYAVTEN
KGRLLTPATLTPSNSGLSGRDRTLKNTNTILDTSLVSPLGDSHLLTVGGQYWDASVKDGIVLANSGETFEQKSWSLYAED
DWQLLDPLSLTLGARYEKHDSFGGHLSPRAYLVWNVADDWTVKGGVSTGYKAPSLAQLHNGVSGVAKNGTAMTIGNPNLK
PEESTNFETGLYYGNDANVNANITGFVNHYKNAIGSLDITPSEGSYRNIGKARTQGIEFATSFPVVVPELTLELNYTYTH
SEQIGGKNPGAALTTTAKHMANARLNWQIDEQWNSWLAAEYRAKTPRFTDNYANLNTTQKLVYDDRGADLKAWTVVNLGT
SYKVTKDVTLNGTVNNLLDKDFSDVRPYTTIINNRPNTYYAGDYFDSSRSTTGYVTPGRNYWVSVNVNF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
r4 AAC61730.1 exogenous ferric siderophore receptor R4 Not tested PAI I CFT073 Protein 0.0 60
unnamed CAC39288.1 hypothetical protein Not tested LPA Protein 0.0 60
c3610 NP_755485.1 bifunctional enterobactin receptor/adhesin protein Not tested PAI I CFT073 Protein 0.0 60
ECUMN_3356 YP_002414032.1 bifunctional enterobactin receptor/adhesin protein Virulence Not named Protein 0.0 60
iha AAF36432.2 adhesin Virulence TAI Protein 0.0 60
Z1178 NP_286713.1 bifunctional enterobactin receptor/adhesin protein Virulence TAI Protein 0.0 60
Z1617 NP_287121.1 bifunctional enterobactin receptor/adhesin protein Not tested TAI Protein 0.0 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1876 YP_006282838.1 Colicin I receptor VFG1731 Protein 0.0 60