|
Name : W5S_1860 (W5S_1860) Accession : YP_006282822.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Unknown Product : Oligopeptide/dipeptide uptake family ABC transporter, ATP-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 2012942 - 2014534 bp Length : 1593 bp Strand : - Note : - DNA sequence : ATGTCCAGTTCACCTTTATTGCAGATAGATAATCTCAGCATTGCCTTCCGCAAAGGCGAGCAGGAACAGCGCGTTGTCGA CCAGCTTTCACTGTCGGTGAACGCGGGTGAGACGCTAGCGCTGGTCGGTGAATCAGGTTCGGGGAAAAGCGTCACGGCAC TGTCAGTTTTGCGTTTGCTCCCCTCCCCACCTGTGGTTTATCCGCAAGGGGATATCCGCTTCGCAGGACAATCACTACTG CATGCCGATGAAAAAACCTTGCGTCAGATACGCGGTAATCGGATCGCAATGATCTTTCAGGAACCGATGGTGTCGCTCAA TCCCTTGCAAAGTATTGAGAAGCAGCTGATTGAAGTGCTTTCATTACACCGCGGAATGCGCACCGAGGCGGCCCACAGCG AGGTCATCTCCTGCCTGGATCGCGTGGGCATCCGTCAAGCGAAAAGCCGGTTGAATGATTTCCCACACCAGCTTTCCGGC GGAGAACGCCAGCGCGTGATGATTGCGATGGCGCTACTGACCCAACCCGATTTACTGATTGCCGATGAGCCCACAACGGC GTTAGACGTTACCGTTCAGGCACAAATATTGAAATTGCTGAACGAGCTGAAGCAGGAACTGGGGATGAGTTTATTCTTCA TCACCCACGACCTGAATATCGTCCGTCAGTTGGCAGATAATGTATCGGTGATGAAAGCAGGTAAGGCGGTGGAGCACAAC AGCTGTCAGCAGCTTTTCAGCGCCCCTCAGCATCCTTACACGCGCCAATTACTGGACGCAGAACCATCGGGTGAGCCGCT TACGATAGAAGATGACGGTGAGCCACTTCTGCGGGTGGAAAAACTGCATGTTTCGTTTCCCATCAAACGCGGCCTTTTGC GCCGTACCGTTGATGAAAAGCAAGTCGTTAACAACATTACCTTTACCTTACGACGCGGTGAAAGTCTCGGTCTGGTAGGG GAATCCGGTTCAGGAAAAAGCACCACCGGATTAGCGCTGCTGCGCCTGATTCAATCGCGTGGCGATATCTGGTTTGACGG CCAGCCCTTGCAGGGACTCACCCGTAAGCAAATGCTGCCCTTCCGCAACCGGATTCAGGTTGTTTTTCAGGACCCCAATT CCGCACTGAACCCGCGGCTGAATGTGGAGCAAATCATTGCCGAAGGGTTAACCGTCCATCACAAGTTGAGCAAAGAAGCG CGCGAACAACGCGTGGTCACGGTGATGCAGGAAGTGGGGCTAGATCCTACCACCCGCTACCGCTATCCCTCGGAGTTTTC CGGCGGTCAACGTCAGCGCATTGCTATCGCTCGAGCACTGATACTGCAACCGGAACTGCTGATCCTCGATGAACCGACAT CGTCGCTAGACAGGACGGTACAGGCACAAATTCTGACGCTGCTGAAATCATTACAGGCAAAGCACAAAATCGCCTACCTG TTTATCAGTCATGATTTGCAGGTTATTCGCTCACTGTGTCATCAGGTTATTGTGTTACGACAGGGCGAAGTCGTCGAACA AGGCGAATGTAAACAGGTATTCACCCACCCTGCCGAACAGTACACGCGGGAACTGCTACAGTTTTCATCCTGA Protein sequence : MSSSPLLQIDNLSIAFRKGEQEQRVVDQLSLSVNAGETLALVGESGSGKSVTALSVLRLLPSPPVVYPQGDIRFAGQSLL HADEKTLRQIRGNRIAMIFQEPMVSLNPLQSIEKQLIEVLSLHRGMRTEAAHSEVISCLDRVGIRQAKSRLNDFPHQLSG GERQRVMIAMALLTQPDLLIADEPTTALDVTVQAQILKLLNELKQELGMSLFFITHDLNIVRQLADNVSVMKAGKAVEHN SCQQLFSAPQHPYTRQLLDAEPSGEPLTIEDDGEPLLRVEKLHVSFPIKRGLLRRTVDEKQVVNNITFTLRRGESLGLVG ESGSGKSTTGLALLRLIQSRGDIWFDGQPLQGLTRKQMLPFRNRIQVVFQDPNSALNPRLNVEQIIAEGLTVHHKLSKEA REQRVVTVMQEVGLDPTTRYRYPSEFSGGQRQRIAIARALILQPELLILDEPTSSLDRTVQAQILTLLKSLQAKHKIAYL FISHDLQVIRSLCHQVIVLRQGEVVEQGECKQVFTHPAEQYTRELLQFSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| dppD | YP_005160017.1 | putative peptide ABC transport system ATP-binding protein | Not tested | Not named | Protein | 2e-87 | 42 |
| cpfrc_01561 | YP_003783961.1 | hypothetical protein | Not tested | PiCp 6 | Protein | 2e-76 | 41 |
| oppDF2 | YP_005686002.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 2e-76 | 41 |
| oppDF2 | YP_005681814.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 2e-76 | 41 |
| oppDF2 | YP_005683914.1 | Oligopeptide transport ATP-binding protein OppD | Not tested | PiCp 6 | Protein | 2e-76 | 41 |
