Gene Information

Name : W5S_1848 (W5S_1848)
Accession : YP_006282811.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : Prophage CP4-57 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2001187 - 2002416 bp
Length : 1230 bp
Strand : -
Note : -

DNA sequence : 
ATGGCACGTCAGACAAAGCCCCTGAACAATACTGAGGTCAAAAGCGCCAAGGCCACTGACCGTGCCGTCACTCTCTACGA
TGGAGACGGTTTAGAATTACAGGTCACTCCGAGCGGTTCAAAACTCTGGCGTTTTCGCTACTACAAACCCTTCACTCGCA
AACGTGCAATGATTAGCCTTGGCTCTTACCCTTCGGTATCTCTTGCCGAAGCGCGTAAGCTCCGCGAAGATGCACGACTT
CTTCTTAGCAAAGACGTTGACCCGCAGGAGCATAAGCAAGCAGAGCAATCACGGCAAAAAAATGCCACAGAGAACACATT
TGAAAAAGTGGCTGCCGAATGGTTTAAAACTAAAGAATCAGCAGGTTTGGCAACACATACGTTGAACGACATCTGGCGAT
CCATGAGCAAGTATGTGTTCCCCCACATTGGCTCTATGCCTATTGCTAACATCACGGCTCAACGATTTATTGGAGCGTTA
GAACCCACTCATGCCGCTGGCAGGCTTGAGACTGTAAAAAGGCTGAGTCAGCGTATTAATGAAGTCATGGATTATGCCCT
CAACTCTGGTCTGGTATCTGTAAATCCAGCCGCACGAATTGGACGAACATTCCATAAGCCGAAGGTGAAGCATCGCCCTG
CCCTCTTGCCAGAGCAATTACCACTTCTGATGAAAACACTGTCATTTGCCAGCATTGGTCGACAAACCCGCTGTCTTATC
GAATGGCAATTACTCACCATGACTCGACCAGCCGAAGCTGCCGAATCACGCTGGGATGAAATCGATTTTCACGCAAAAGA
ATGGCGTATTCCTGCTGGTCGCATGAAGATGAAACGTGAGCACGTTATCCCACTCTCAGAGCAAGCGCTGGGGATTCTGG
AAGTCATGAAGCCCATCAGTAAGCACAGGGATTATGTCTTCCCCGGATATCGTAATCCACTTGAGCCAATGAACAGCCAG
ACAGCGAACATGGCACTCAAACGTATGGGCTTCAAAGATATGCTTGTAGCTCATGGTATGAGAGCCATTGCTTCGACCAT
CCTCAATGAAAAAGGATTTCCCCCTGATGTGATCGAAGCAGCGTTAGCGCATATCGATACTAATGAAGTCAGGAGAGCCT
ATAACAGGGCGCAGTATCTTGAACAGCGCAGAGAAATGATGGCCTGGTGGGGAGAGCATGTTGAGTCAGCTTCATATGGT
AAAACAAGCATCATTTCTGTCGCTGGCTAA

Protein sequence : 
MARQTKPLNNTEVKSAKATDRAVTLYDGDGLELQVTPSGSKLWRFRYYKPFTRKRAMISLGSYPSVSLAEARKLREDARL
LLSKDVDPQEHKQAEQSRQKNATENTFEKVAAEWFKTKESAGLATHTLNDIWRSMSKYVFPHIGSMPIANITAQRFIGAL
EPTHAAGRLETVKRLSQRINEVMDYALNSGLVSVNPAARIGRTFHKPKVKHRPALLPEQLPLLMKTLSFASIGRQTRCLI
EWQLLTMTRPAEAAESRWDEIDFHAKEWRIPAGRMKMKREHVIPLSEQALGILEVMKPISKHRDYVFPGYRNPLEPMNSQ
TANMALKRMGFKDMLVAHGMRAIASTILNEKGFPPDVIEAALAHIDTNEVRRAYNRAQYLEQRREMMAWWGEHVESASYG
KTSIISVAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 9e-107 53
int AAK20773.1 integrase Not tested VPI Protein 1e-109 53
int AAK20803.1 integrase Not tested VPI Protein 1e-109 53
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-109 53
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 2e-109 53
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 2e-109 53
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 4e-93 49
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 1e-92 49
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 1e-92 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1848 YP_006282811.1 Prophage CP4-57 integrase VFG1092 Protein 4e-93 49