Gene Information

Name : W5S_1816 (W5S_1816)
Accession : YP_006282779.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Phage transcriptional regulator, AlpA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1975830 - 1976045 bp
Length : 216 bp
Strand : +
Note : -

DNA sequence :
ATGAATACCCAGAATCGCCTTATTCGTTTCCCCGAAATGAGAAAAACCGGCTTTGGAAAAGCCTGGCTCTATCGTCTTAT
TAATGAAGAGCGTTTCCCCCAACCTGTAAAAATCGGTATCCGTGCTGTTGCGTTTGTTGAAAATGAAATTGATGAATGGA
TAGTGGTCGCTATCGAGAAAAGAAAACCCTTGAGAAAACGTAAAGAAATCCAGTGA

Protein sequence :
MNTQNRLIRFPEMRKTGFGKAWLYRLINEERFPQPVKIGIRAVAFVENEIDEWIVVAIEKRKPLRKRKEIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0041 ACA01856.1 predicted transcriptional regulator Not tested VPI-2 Protein 8e-09 47
VC1809 NP_231443.1 transcriptional regulator Not tested VPI-2 Protein 1e-08 47
VC0395_A1406 YP_001217349.1 transcriptional regulator Not tested VPI-2 Protein 1e-08 47
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 2e-06 41
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 2e-05 41
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 2e-05 41
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 2e-05 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1816 YP_006282779.1 Phage transcriptional regulator, AlpA VFG1141 Protein 3e-09 47
W5S_1816 YP_006282779.1 Phage transcriptional regulator, AlpA VFG1118 Protein 7e-06 41