Gene Information

Name : W5S_1792 (W5S_1792)
Accession : YP_006282755.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1953277 - 1953957 bp
Length : 681 bp
Strand : -
Note : -

DNA sequence : 
ATGGGCACAACTTCCTGGAATTGTGACTCAACCATTACTAATGGCGGACAAAGTTGGACGTTACCAGTACAGACGTTGGT
TTTCCTCACGTCATTAACGTTTATCCCTGCCGCATTGCTGATGATGACCAGTTTCACCCGAATCATCATCGTACTAAGTT
TGTTACGTAATGCCTTGGGGACACCCACTGCGCCACCAAACCAAGTGTTGTTGGGATTGACGCTGTTCCTGACATTTTTT
GTCATGTCGCCAGTATTAAACCGCGTTTATGAAGAAGCCTACCTTCCATTCAGTCAGGATCAAATCAGTATGGAAGTCGC
CATTGAACGCGGCGCGGAGCCAGTGCGTGAGTTCATGCTGCGGCAGACGCGGGAAACCGATCTAGCACTGTTTACCAGAC
TGGCAGAAATTCCAGAGATTCAGGGGCCTGAAGCAGTACCTATGCGCGTGCTTCTCCCCGCATTTGTAACAAGTGAGTTA
AAAACAGCTTTCCAGATTGGCTTCACTGTCTTTATTCCTTTTCTTATCATCGACCTCGTTGTTGCCAGTGTACTGATGGC
TCTGGGGATGATGATGGTTCCTCCGGCAACTATTTCTTTGCCTTTTAAACTCATGCTTTTCGTATTAGTCGATGGTTGGC
AACTGCTACTCGGTTCATTAGCACAAAGTTTTTATAGTTAG

Protein sequence : 
MGTTSWNCDSTITNGGQSWTLPVQTLVFLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFF
VMSPVLNRVYEEAYLPFSQDQISMEVAIERGAEPVREFMLRQTRETDLALFTRLAEIPEIQGPEAVPMRVLLPAFVTSEL
KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-23 44
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-23 44
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-23 44
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 2e-25 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-18 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-18 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-19 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-19 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 2e-26 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-28 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-26 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-28 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-28 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-28 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 3e-27 41
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 5e-27 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 4e-27 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-26 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 8e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1792 YP_006282755.1 Flagellar biosynthetic protein FliP VFG2338 Protein 2e-82 82
W5S_1792 YP_006282755.1 Flagellar biosynthetic protein FliP VFG2494 Protein 3e-68 71
W5S_1792 YP_006282755.1 Flagellar biosynthetic protein FliP VFG1259 Protein 5e-56 59
W5S_1792 YP_006282755.1 Flagellar biosynthetic protein FliP VFG2016 Protein 1e-52 58
W5S_1792 YP_006282755.1 Flagellar biosynthetic protein FliP VFG0188 Protein 5e-28 44
W5S_1792 YP_006282755.1 Flagellar biosynthetic protein FliP VFG0044 Protein 3e-28 42