Gene Information

Name : W5S_1679 (W5S_1679)
Accession : YP_006282643.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : Prophage P4 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1820572 - 1821846 bp
Length : 1275 bp
Strand : -
Note : -

DNA sequence :
ATGTCACTTACTGACACCAAAGTAAAAAAAGCTAAACCTCTTGAGAAAGAATACAAGCTTACTGATGGTTTTGGTATGCA
CCTGCTTATCCACCCGAACGGATCTAAATACTGGCGGCTTTCCTACCGCTTTGCACAGAAGCAAAAACTGTTAGCGTTGG
GCGTTTACCCTGCTATTTCTTTGACTGACGCAAGGGAGCGTCGTGATGAAGCGCGTAAGCTGATTGCTAATGGGATTGAT
CCAGGAGCCAGAAAAAAATCAGGCCGGGAGCAACAAGGAACACACGATGAGTCTCGCTCCTTTGCTGTAATGGCTCGTGC
ATGGGCTGAGACCAAAACCAAGTGGTCAGAAGACTACAAAGTTAAGGTCTGGAGACGCATTGAAAACTACCTCCTGCCAG
ATCTGGGAAATCGTGATGTATCAGAGCTTGATACCAGCGATTTACTCATCCCCCTAAGAAAAGTTGAGAAATTAGGCTAT
CTCGACATCGCCATGCGCCTGAAGCAGTATACAACCTCTATCATGCGATACGCCGTCCAGCAGAAGATCATCAGTTATAA
CCCTGCTTATGATTTGCAAGGCACTATCGAAAAAGGTGAGACAGCACACCGCCCTTCTATCGAAATCTATGAAATTCCCG
ATCTCTTACAAAAACTCGACAACTACCGTGGTCGGGGGCTTTTAACAGAATTAGCGATCAGGCTCACATTATTGGTTTTT
GTCAGGTCAAGTGAGTTACGTTTTGCCCGATGGAGTGAAATCGACTTCAAAAAATCTCTCTGGGTTATCCCTGAACAACG
CAAAGAAGTTAAAGGGGTAAAACACTCTGGTCGTGGTGCCAAAATGAAGAGAAAGCATTTTGTCCCACTGTGCAGGCAGG
CGGTTGAGATCTTGAAAGAGGTTAAACAGATCACTTATGGTGAAAAAGCGGGTGACGGGTTTATTTTCACCGGGTTTTAC
GACAGTGATTCTGCGATGAGTTCAGGCACTATCAATAAAGCCCTTCAGCGTATGGGATACGACACCAAAACCGATCTGTG
TGGGCATGGCTTTCGCACGTTAGCCTGTAGTGCATTGACAGAATCGGGATTATGGTCGGAAGACACGGTTGAGCTTCAAA
TGAGCCATAAAGAAAAAAACACCGTTAGATCTGCTTATACCCATAAAGTCAGTCATCTTGACCAGCGTAAACTGATGCTG
CAATGGTGGGCTGATTTTCTGGATGCGAACCGCAATGGAGTAGTTAGCCCGTTTGAGTTTGCACAGAAAGGATAG

Protein sequence :
MSLTDTKVKKAKPLEKEYKLTDGFGMHLLIHPNGSKYWRLSYRFAQKQKLLALGVYPAISLTDARERRDEARKLIANGID
PGARKKSGREQQGTHDESRSFAVMARAWAETKTKWSEDYKVKVWRRIENYLLPDLGNRDVSELDTSDLLIPLRKVEKLGY
LDIAMRLKQYTTSIMRYAVQQKIISYNPAYDLQGTIEKGETAHRPSIEIYEIPDLLQKLDNYRGRGLLTELAIRLTLLVF
VRSSELRFARWSEIDFKKSLWVIPEQRKEVKGVKHSGRGAKMKRKHFVPLCRQAVEILKEVKQITYGEKAGDGFIFTGFY
DSDSAMSSGTINKALQRMGYDTKTDLCGHGFRTLACSALTESGLWSEDTVELQMSHKEKNTVRSAYTHKVSHLDQRKLML
QWWADFLDANRNGVVSPFEFAQKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-110 56
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-105 52
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-107 52
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-107 52
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-107 52
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-107 52
int AAK00456.1 Int Not tested SHI-1 Protein 1e-98 52
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-107 52
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 4e-107 52
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-107 52
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-105 52
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-107 52
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-107 52
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-107 52
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-107 52
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-107 52
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-107 52
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-107 52
int AAK16198.1 Int Not tested PAI-I AL862 Protein 5e-107 52
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 5e-107 52
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-100 51
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-100 51
int CAC81896.1 integrase Not tested LEE II Protein 3e-98 51
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-106 51
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-94 49
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-95 47
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-95 47
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 7e-85 46
int YP_002346908.1 integrase Not tested HPI Protein 2e-86 45
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-86 45
int2 NP_993013.1 integrase Not tested HPI Protein 2e-86 45
int CAA21384.1 - Not tested HPI Protein 2e-86 45
int CAB59974.1 integrase Not tested HPI Protein 3e-86 45
int CAA08754.1 integrase Not tested HPI Protein 7e-87 45
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-57 44
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 3e-70 44
unnamed AAD17660.1 unknown Not tested HPI Protein 4e-83 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1679 YP_006282643.1 Prophage P4 integrase VFG1536 Protein 1e-110 56
W5S_1679 YP_006282643.1 Prophage P4 integrase VFG0626 Protein 1e-107 52
W5S_1679 YP_006282643.1 Prophage P4 integrase VFG1693 Protein 6e-108 52