Gene Information

Name : W5S_1599 (W5S_1599)
Accession : YP_006282563.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : Prophage P4 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1742026 - 1743303 bp
Length : 1278 bp
Strand : -
Note : -

DNA sequence :
ATGTCACTAACTGATACTAAAGTAAAAAATGCCAAGCCGTCAGAAAAGGCGGTGAAGCTCACTGACGGGTTCGGCCTCTA
CTTGCTGGTTCATCCCAATGGTTCCAAATACTGGCAGTTAGGCTATCGCTTTCAAGGGAAACAGAAGGTGTTTTCCATCG
GCGTCTACCCTGCTGTTTCTCTGGCTGATGCCAGACAACGACGAGATGAAGCAAAAAAGCTGTTAGCGGCGGGAATCGAC
CCCAGCGCCAAAAAACAGGCTGACAACAAAATCGTTCAAGAGCGGCGTAACAACACCCGCGCTTTCAAAACGGTTGCCAA
AAGCTGGTTTGCCACCAAAACCACATGGTCGGAAGATTATCAACGTTCTGTCTGGACACGACTCGAAACCTATCTGTTCC
CTGATATTGGTAACAAGGACATTGCTGAACTGGATACAGGCGATCTGCTGGTTCCCATCAAAAAAATAGAAAAGCTGGGC
TATCTGGAAATTGCCATGCGGGTGAAACAGTACGCTACTGCCATCATGCGTTATGCCGTCCAGCAAAAGATGATCCGTTT
CAATCCTGCCTATGATTTAGAAGGCGCGGTTCAGAAGCATCAGACGGAACACCGCCCCGCTATCGAACTGGAAGAGATAC
CTACCCTGCTGGAACGCATTGAAGCCTATAAAGGCCGCAGCAGGCTTACCCAATTGGCGATAAAACTCAATTTGCTGATT
TTTGTCCGTTCCAGTGAACTCCGCTTTGCCCGTTGGTCAGAGATCGATTTCAAAAGTGCTTTGTGGGTTATCCCTGAAGA
GCGTGAAACCATTGAAGGGATCAAGCATTCAGGCCGTGGTGCAAAAATGCGCAGAAAGCATTATGTTCCTCTATGCAATC
AAGCACTGGCAATTTTGGAAGAGCTTAAAGACCTCACCTATGATGTTAACGGTGATGACGGCTTTATCCTGACTGGCTGT
TATGATGCGATGAAGCCGATGAGTGAAAACACCATCAACAAGGCACTGCGCAAAATGGGTTATGACACAAAAACCGATCT
GTGTGGTCATGGTTTTCGAACGCTGGCGTGTAGTGCCTTGATTGAATCGGGTATCTGGCCTGAAGATGTGGTTGAACTTC
AGATGAGCCACATGGAAAAGAACAACGTTCGCGCTGCCTACACTCACAAGGCCAAACACCTTGAACAACGCCGCCTAATG
CTGCAATGGTGGGCTGATTTTCTGGATGCTAACAGCAACGGGATGGTTAGGCCGTTTGAGTTTGGGCAGAAGGGATAA

Protein sequence :
MSLTDTKVKNAKPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFQGKQKVFSIGVYPAVSLADARQRRDEAKKLLAAGID
PSAKKQADNKIVQERRNNTRAFKTVAKSWFATKTTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLG
YLEIAMRVKQYATAIMRYAVQQKMIRFNPAYDLEGAVQKHQTEHRPAIELEEIPTLLERIEAYKGRSRLTQLAIKLNLLI
FVRSSELRFARWSEIDFKSALWVIPEERETIEGIKHSGRGAKMRRKHYVPLCNQALAILEELKDLTYDVNGDDGFILTGC
YDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSALIESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLM
LQWWADFLDANSNGMVRPFEFGQKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-115 60
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-114 56
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-116 56
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-116 56
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-116 56
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-115 56
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-116 56
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-116 56
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-116 56
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 4e-116 56
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 4e-116 56
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-116 56
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-116 56
int AAK00456.1 Int Not tested SHI-1 Protein 7e-108 55
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-108 55
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-108 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 9e-116 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 9e-116 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 5e-115 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-115 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 9e-116 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-114 55
int CAC81896.1 integrase Not tested LEE II Protein 4e-108 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-115 55
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 3e-102 51
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 3e-102 51
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 3e-97 50
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 3e-65 49
int2 NP_993013.1 integrase Not tested HPI Protein 4e-94 49
int CAA21384.1 - Not tested HPI Protein 4e-94 49
int CAA08754.1 integrase Not tested HPI Protein 2e-94 49
int CAB59974.1 integrase Not tested HPI Protein 1e-94 49
int YP_002346908.1 integrase Not tested HPI Protein 4e-94 49
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 4e-94 49
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-77 48
unnamed AAD17660.1 unknown Not tested HPI Protein 9e-91 48
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 5e-94 48
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-67 42
int ACU09430.1 integrase Not tested LEE Protein 4e-68 41
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 5e-68 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 5e-68 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 4e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1599 YP_006282563.1 Prophage P4 integrase VFG1536 Protein 8e-116 60
W5S_1599 YP_006282563.1 Prophage P4 integrase VFG0626 Protein 4e-116 55
W5S_1599 YP_006282563.1 Prophage P4 integrase VFG1693 Protein 2e-115 55
W5S_1599 YP_006282563.1 Prophage P4 integrase VFG0783 Protein 2e-68 41