Gene Information

Name : W5S_1573 (W5S_1573)
Accession : YP_006282537.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Outer membrane usher protein PapC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1716878 - 1718779 bp
Length : 1902 bp
Strand : +
Note : -

DNA sequence : 
ATGGGATTGTCACCGAATGTAAAATTAGTCTTTCTTTATCTTTTAGGGCTGTATATGTCTCTGACGATGGGGGGGCAGAT
TGCGTCGGTGTATGCTGCAGAGGAAATTCAGTTCAATACCGATGTCTTGGACGTAAACGATCGAAGTAATATCGATCTCA
GTCAGTTCTCTCGTAGTGGCTATATCATGCCTGGCATCTACGGGATGGTTGTGCATGTCAATAAGACTGATTTACCAGAG
CAGCAGGTGACGTTTTATATTCCGGAGAACGATCCGCGTGGCAGTCGTGCCTGTATCAGCAAGACGCTAGCTGGGCAACT
GGGATTTAAGTTGGAGATATTCAAGACGCTGAACTGGTGGCATACAGGAGAGTGTCTGGATGAAAGTAGTGTGAATGGAA
TGACTGTCCGAGGCGATTTATCGACATCTTCACTTTACCTGAGTATTCCACAGGCTTATCTGGAGTACACCTCGGATGAT
TGGGATCCACCATCGCGCTGGGATGAAGGTATCCCAGGGCTGTTGTTTGACTATAACACCAACTTCCGGACTCGCAAGCA
GCACGATGGCGGCAGTGGATATGCGCTGAGCGGTAACGGAACAACCGGGGCCAACTTCGGGCCTTGGCGGCTTAGAGCTG
ACTGGCAGGCAAATATTGATCACCAGACAGGGTCTGGACTGCGGACGGAGCAGCGACTGGACTGGAGCCGCTACTATGCC
TACCGCGCGATACCAAACTGGCATTCAAAACTGACGGTGGGCGAAAGCTATCTTGATTCTGGGATGTTCGACAGTTTCCG
TTTTGTTGGGGCCGGTCTGGAGTCAGATGACAACATGCTGCCGCCGAACCTACGTGGTTATGCGCCGGAAGTGGTGGGCG
TGGCCAGGACCAATGCCAGAGTGGTGGTTAGTCAACAAGGGCGAGTGTTGTATGACACGACGGTAGCCTCTGGGCCATTC
CGTATTCAAGATATCAGTGATGCAGTCAGCGGTGAGCTGGATGTGCGGGTGGAAGAGCAGGATGGCAGTGTGCAGGTGTT
CACCATAAACACGTCCAGTATTCCCTACCTGACGCGTCCGGGCTCGGTACGATTCAAAGTGGCAGCAGGTAAGCCGTCCG
ATTTTGATCACCATCTTCAGGGCCCTCTGTTTAGTACCGGTGAGTTCTCTTGGGGGGTGAGTAATGGTTGGTCATTATAC
GGTGGAGCGCTGATAGGCGGAGATTATAACGCGTTGTCCATCGGTGGCGGGCGTGATCTGACCGTGCTGGGAGCCATTTC
ATTAGATATGACTCAGTCTCGAGCGCGGTTGCCGCAGGAAGACCGTACTCGGGAAGGCGGTTCGTATCGACTGAGTTATT
CAAAGAACTTTGATGAGTACGACAGCCAGGTGACGTTTGCCGGTTACCGCTTTTCAGAGAAGAACTTTATGAGCATGGGC
GAATATCTGGACGCTCGCCGATATGGCTACCATGTGGGAAACGGAAAAGAGATGTACACCATCACATTTAACAAAAATTT
CCGCGACCAGGGACTGAGTGCCTATCTCAATTATAGCCACGAGACATTCTGGGATAGTCCGGTAAACGATCGTTATAACC
TGACATTGTCGCATTATTTTGATTGGGGACGCTTTCGTAATCTGAGTTTGTCGTTGTCAGCGTACCACAATGAAAGAGGC
GGTATGACCGATGATGGGGGATATCTATCACTGTCGGTTCCATGGAGTAATAGCGCCACGGTGAGTTACAGCGCATCAAC
CAGCAGAAGCAATACGACCCAGCAGGTGGGGTATTACAGCCGGATTAATGAGCGCGATAACTACCAGTTGAATGTGGGGG
AACACGCCGTGGGGGTAATGTGTCTGGGTATTATAACCATGAAGGTGATGCCGCTCGGATGA

Protein sequence : 
MGLSPNVKLVFLYLLGLYMSLTMGGQIASVYAAEEIQFNTDVLDVNDRSNIDLSQFSRSGYIMPGIYGMVVHVNKTDLPE
QQVTFYIPENDPRGSRACISKTLAGQLGFKLEIFKTLNWWHTGECLDESSVNGMTVRGDLSTSSLYLSIPQAYLEYTSDD
WDPPSRWDEGIPGLLFDYNTNFRTRKQHDGGSGYALSGNGTTGANFGPWRLRADWQANIDHQTGSGLRTEQRLDWSRYYA
YRAIPNWHSKLTVGESYLDSGMFDSFRFVGAGLESDDNMLPPNLRGYAPEVVGVARTNARVVVSQQGRVLYDTTVASGPF
RIQDISDAVSGELDVRVEEQDGSVQVFTINTSSIPYLTRPGSVRFKVAAGKPSDFDHHLQGPLFSTGEFSWGVSNGWSLY
GGALIGGDYNALSIGGGRDLTVLGAISLDMTQSRARLPQEDRTREGGSYRLSYSKNFDEYDSQVTFAGYRFSEKNFMSMG
EYLDARRYGYHVGNGKEMYTITFNKNFRDQGLSAYLNYSHETFWDSPVNDRYNLTLSHYFDWGRFRNLSLSLSAYHNERG
GMTDDGGYLSLSVPWSNSATVSYSASTSRSNTTQQVGYYSRINERDNYQLNVGEHAVGVMCLGIITMKVMPLG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
papCb AAL67415.1 truncated PapC Virulence PAI II CFT073 Protein 9e-119 49
pixC CAE85159.1 PixC protein Not tested PAI V 536 Protein 2e-140 49
prfC CAD42029.1 PrfC protein Virulence PAI II 536 Protein 3e-124 46
papC AAZ04424.1 outer membrane usher protein Virulence PAI I APEC-O1 Protein 6e-123 46
papC YP_854254.1 outer membrane usher protein PapC Virulence PAI I APEC-O1 Protein 8e-123 46
papC NP_755465.1 PapC protein Virulence PAI I CFT073 Protein 4e-124 46
papC YP_002414015.1 Outer membrane usher protein PapC Not tested Not named Protein 4e-124 46
papC_2 NP_757034.1 PapC protein Virulence PAI II CFT073 Protein 4e-124 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1573 YP_006282537.1 Outer membrane usher protein PapC VFG1548 Protein 2e-124 46
W5S_1573 YP_006282537.1 Outer membrane usher protein PapC VFG0884 Protein 2e-124 46
W5S_1573 YP_006282537.1 Outer membrane usher protein PapC VFG0895 Protein 2e-124 46