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Name : W5S_1563 (W5S_1563) Accession : YP_006282527.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Virulence Product : General secretion pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 1706327 - 1707970 bp Length : 1644 bp Strand : - Note : - DNA sequence : ATGCAATCCCTTGATCACCATCCTTCAACTCTAGACATACTGGATACTTTAGTAGATTCGTCAGGAGTGCAAAATGTTCG GGCACTGGCGACGCTGCTGGATAACAAGCCAGAACGTTTGCCCGAACTGGCTAACGCATTGGGGTTAGCAGCACTGACGC CTAAGCAGCAGGCACATGCACAGATCGATTTCACCCATGTTTCACTTGCAGAAGCACTGACACAGCGCGTGCTACCTTTG CAATACCAGCAACAGGGCTGGTTACTTGCAGAAGATCCGTTCTCTCTGGCTTTGCGTCAATGGATGCAGCATTTTCCACT GAGTCCGGCGCTCGCCTCTCCAACCTGGATCACTAACCAACTGAATAAGCTAGGGAAGCAGCAACGCACACTGGATCAAC TAGAACAACAAAATGGAGACAGCAGCAGCGACACGGCACTACTGGAGATTTCACCTGCCAGCATTGCTCAGGAAAGTAAC GCAGTTATCAAGCTGGTTAATGCCACACTATTTGATGCGCTGCAAAGCCGCGCCAGCGATATTCACCTCTCCGCAGAACC CGACGGACTGGCGGTCAAATATCGTATTGACGGCGTGTTGCACACCATTCGTCACTGTACCGGACAACAGCATGCCGAAC AGGTTATTTCACGTTTGAAAGTCCTGAGCGGCATGGATATTGCTGAACGTCGTATTCCACAAGATGGCCGTTTTAAAGCC GCTATCCATCAGCGGCCGGTGGATTTTCGTGTTTCCGTTGTACCGGGTATTCACGGGGAAGATGCTGTCCTCCGCGTACT GGATAAGTCACACGACCAGAATCTGCGTCTGGAATCGTTAGGTTTCGATGATCACACCCAAAAAGCCATCCGCCAGCTAA CCCATATGCCTCATGGGATGGTTCTGGTAACCGGACCTACCGGAAGCGGGAAATCGACTACGCTTTACGCCGCGCTAAGT GAGTTGAATAGTGGTGAAAGTAAAATCATTACGATTGAAGATCCCGTTGAATATCAAATAAATAGCGTACTACAGATTCC AGTGAATGATAAAAAAGGCCTCACCTTTGCCCGTGGACTGCGCGCTGTTTTACGTCATGACCCGGACATTATTCTGGTCG GAGAAATTCGTGATGGTGAAACGGCCGGTATTGCGGTTCAGGCGGCCTTAACCGGCCATGTGGTGCTCTCTTCTGTACAC GCCAATAGCGCCTTTAGCGTGCTGGAACGTTTTCTGTATATGCAGGTAGAACCTGCCAGCCTGATCACTGCGTTGAATGG TGTGATCGCTCAGCGTTTAGTTCGTGGCATCTGTCCGTCCTGTGCCATTGAAGTCGAACCCGAAGCAAAAGAAATAACAC TCTGGCAGGCGAGTCGTCTACGGGAAATGAAACCTCTCTGGCGACGTGGACAAGGGTGTGAAACCTGTCGACATAGCGGT TACCACGGTCGTCTGGCGCTAGCAGAGGTACTCTCCTTCAGCGATGCGATGAAAGAGGCGCTGTTAGCACGAGCCTCTAC ACGGCATCTGCGCGAAGTGGCGCTCAATGAAGGCTTTATTCCATTAAAAGAGATCGCACTCCGTGCGGTACTGGAAGGTA AAACTACGTTACAGGAGATTAACCGTGTTATTGGGCAGGATTAA Protein sequence : MQSLDHHPSTLDILDTLVDSSGVQNVRALATLLDNKPERLPELANALGLAALTPKQQAHAQIDFTHVSLAEALTQRVLPL QYQQQGWLLAEDPFSLALRQWMQHFPLSPALASPTWITNQLNKLGKQQRTLDQLEQQNGDSSSDTALLEISPASIAQESN AVIKLVNATLFDALQSRASDIHLSAEPDGLAVKYRIDGVLHTIRHCTGQQHAEQVISRLKVLSGMDIAERRIPQDGRFKA AIHQRPVDFRVSVVPGIHGEDAVLRVLDKSHDQNLRLESLGFDDHTQKAIRQLTHMPHGMVLVTGPTGSGKSTTLYAALS ELNSGESKIITIEDPVEYQINSVLQIPVNDKKGLTFARGLRAVLRHDPDIILVGEIRDGETAGIAVQAALTGHVVLSSVH ANSAFSVLERFLYMQVEPASLITALNGVIAQRLVRGICPSCAIEVEPEAKEITLWQASRLREMKPLWRRGQGCETCRHSG YHGRLALAEVLSFSDAMKEALLARASTRHLREVALNEGFIPLKEIALRAVLEGKTTLQEINRVIGQD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 8e-73 | 45 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 6e-73 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| W5S_1563 | YP_006282527.1 | General secretion pathway protein E | VFG2048 | Protein | 8e-75 | 45 |
| W5S_1563 | YP_006282527.1 | General secretion pathway protein E | VFG1876 | Protein | 1e-72 | 44 |
| W5S_1563 | YP_006282527.1 | General secretion pathway protein E | VFG2426 | Protein | 6e-67 | 42 |
| W5S_1563 | YP_006282527.1 | General secretion pathway protein E | VFG0233 | Protein | 9e-70 | 41 |
