Gene Information

Name : W5S_1548 (W5S_1548)
Accession : YP_006282512.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Virulence
Product : Chaperone protein FimC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1693165 - 1693971 bp
Length : 807 bp
Strand : -
Note : -

DNA sequence : 
ATGAACTCTGTATTGATGGATTATGTAGTACCGAAATTTCTCATCTATGACTGCTGGCATTATTTAGTAATGCATATTTT
ACTGTGTTATTTAATTCGGGCTAAAAAAATGAAATTAACATCGTATAATCTCTTAGGCGGCACGCTGCTTTGCGTATTCG
GTTTGTTTTCAACATTGGTCTCAGCGGGAGGAATTTCCCTGGGAGGGACACGAGTCGTTTATCCACTGGATGCCAAACAA
ACATCGGTATCCATCAGAAACACCGATGATAGTGCAATTTATCTGGTGCAGTCTTGGATAGAGAAACAGGACGGAACCCG
AACTCAGGACTTTATTGTTACCCCACCGCTATATACCAGCAGACCAGGAAATGAAAATACACTACGCCTAATATCCGTTG
ATGCATCGCTCCCTCAGAATAAAGAGAGTCTGTACTATTTTAATGTCAAAGCGGTACCTTCGGTGGATAAAAAAACACGC
GAAGCGGGAAATAGCAGCCTGGTAGTTGCGACAGTCATACGGGTGAAAATGTTTGTTCGCCCAGATGGCTTACAACCTGT
ACGAGATAAGGCCCTTCAAGCCTTGCAGTTTATTCGCAAAGGAGCACAGCTAGAAATCCGCAATCCAACGCCTTATTACC
TGACGATCTCACAACTGAAAGCGGGCAACCATGAGCTGCAGAATGTCATGGTAGCGCCGAAAAGTCATGAGTCGGTCCCC
CTCCCTGCTGGCAGCGGTAACAACCTTAGTTGGCGCACTATCAATGATTACGGTGGTGAAGATAAGGGTGAGGGAAGCAT
TCAGTAA

Protein sequence : 
MNSVLMDYVVPKFLIYDCWHYLVMHILLCYLIRAKKMKLTSYNLLGGTLLCVFGLFSTLVSAGGISLGGTRVVYPLDAKQ
TSVSIRNTDDSAIYLVQSWIEKQDGTRTQDFIVTPPLYTSRPGNENTLRLISVDASLPQNKESLYYFNVKAVPSVDKKTR
EAGNSSLVVATVIRVKMFVRPDGLQPVRDKALQALQFIRKGAQLEIRNPTPYYLTISQLKAGNHELQNVMVAPKSHESVP
LPAGSGNNLSWRTINDYGGEDKGEGSIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2C AFH78430.1 putative fimbrial chaperone protein Virulence KpGI-5 Protein 1e-41 44
sfaE CAC16952.2 SfaE protein Virulence PAI III 536 Protein 6e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1548 YP_006282512.1 Chaperone protein FimC VFG0445 Protein 1e-46 47
W5S_1548 YP_006282512.1 Chaperone protein FimC VFG0911 Protein 3e-40 42
W5S_1548 YP_006282512.1 Chaperone protein FimC VFG1644 Protein 3e-40 42
W5S_1548 YP_006282512.1 Chaperone protein FimC VFG0875 Protein 3e-44 41