Gene Information

Name : W5S_1543 (W5S_1543)
Accession : YP_006282507.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : Prophage P4 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1686133 - 1687392 bp
Length : 1260 bp
Strand : +
Note : -

DNA sequence : 
ATGGCACTCACGGATATCAAGGTACGTTCAGCAAAACCGGAAGAGAAGCCTTATAAACTTACTGATGGAAACGGTATGTT
TCTTTTGGTCCATACCAATGGGTCTAAATATTGGCGCTTACGCTATCGTTCGGATGGTAAAGAAAAGACGCTGGCGCTAG
GTGTCTACCCTGAGGTTTCCCTTTCTGAAGCGCGTCAGAAACGCGATGAGGCACGAAAACTTATTGCGGCTGGTGTTGAT
CCTAACGAGCATAAAAAAGCAGTCAAAACTCAGCAACAAGATGATGAGCAAACCTTCGAGGCAGTGGCTCGCGCTTGGCA
TACTGATAATAAGAAGTGGTCGGAATCTCATGCCGAGCGTATCCTGAAAAGCCTGAGCGACAATATTTTCCCTGCTATCG
GTAGCAAACACATCTCAGATCTGAAAACTCGCGACTTGCTGAGACCGATTAAAAGCGTCGAACGCTCTGGACGCTTAGAA
GTGGCTAAACGCCTAAAACAACGCGTGACTGCCATTATGACCTATGCCGTACAAAACGGCTTGATTGACTATAACCCGGC
GCAGGATATGGCAGGGGCAATTATGCCAGGCAAAGTTGAACATCGCCCTGCATTAGCGCTTGAACGTTTGCCTGAACTTC
TTGGCCGGATTGACGGTTACAAAGGCCGTGAGTTTACCAAGTGGGTTATTAATCTCTCCTTACTGATTTTCATTCGTTCC
AGCGAACTGCGCTTTGCTCGCTGGCCGGAAATCGACTTTGAACGAGCGTTGTGGACGATCCCCCCTGAACGTGAACCGAT
TCCTGGAGTGAAATTCTCCGAACGCGGTTCAAAAATGCACACACCACATCTCGTTCCGCTGAGCCGTCAGGCATTGGAGA
TCCTTACAAAGATCAGAGAAGTGAGTGGGCATTGTGAGCTGGTATTCATTGGCGATCATTCATCACGAAAACCCGTTAGT
GAGGGCACGGTAAATAAAGCACTGCAAACTATGGGCTATGACACGAAAACGGAAGTATGCGGTCACGGTTTTCGTACCAT
GGCGTGTAGTTCGTTGATTGAGTCGGGTTTGTGGTCTAGGGATGCGGTTGAGCGACAGATGAGCCATCAGGAACGTAATG
GCGTCCGCGCGGCGTATATCCATAAGGCAGAGCATCTGGATGAGCGTCGTTTGATGTTGCAGTGGTGGGCAGATTTTCTT
GATGCGAATCGGGAGAGGGGAGTTAGTCCGTTTGATTTTGGGAAGTTGACGACAGGTTAG

Protein sequence : 
MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVSLSEARQKRDEARKLIAAGVD
PNEHKKAVKTQQQDDEQTFEAVARAWHTDNKKWSESHAERILKSLSDNIFPAIGSKHISDLKTRDLLRPIKSVERSGRLE
VAKRLKQRVTAIMTYAVQNGLIDYNPAQDMAGAIMPGKVEHRPALALERLPELLGRIDGYKGREFTKWVINLSLLIFIRS
SELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILTKIREVSGHCELVFIGDHSSRKPVS
EGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFL
DANRERGVSPFDFGKLTTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-136 71
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-139 68
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-139 68
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-139 68
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-136 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 5e-139 68
int AAK16198.1 Int Not tested PAI-I AL862 Protein 4e-139 68
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 4e-139 68
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-136 67
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-139 67
int AAK00456.1 Int Not tested SHI-1 Protein 1e-129 67
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-139 67
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 7e-137 67
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-137 67
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-137 67
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-137 67
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-137 67
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 7e-138 67
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-137 67
int AAL51028.1 CP4-like integrase Not tested LEE Protein 7e-138 67
int-phe AAL60261.1 Int-phe Not tested LEE Protein 7e-138 67
int CAC81896.1 integrase Not tested LEE II Protein 1e-127 67
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-120 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-120 61
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-114 57
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 5e-110 56
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 5e-110 56
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 4e-81 55
int CAA08754.1 integrase Not tested HPI Protein 5e-113 55
int CAB59974.1 integrase Not tested HPI Protein 6e-114 55
int YP_002346908.1 integrase Not tested HPI Protein 2e-112 54
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 2e-112 54
int2 NP_993013.1 integrase Not tested HPI Protein 2e-112 54
int CAA21384.1 - Not tested HPI Protein 2e-112 54
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-88 54
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-109 53
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-101 52
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-82 45
int AAD44730.1 Int Not tested SHI-2 Protein 2e-81 45
int CAC39282.1 integrase Not tested LPA Protein 3e-82 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-80 44
int ACU09430.1 integrase Not tested LEE Protein 3e-80 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-80 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-80 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-80 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 7e-80 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 7e-80 44
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-72 43
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1543 YP_006282507.1 Prophage P4 integrase VFG1536 Protein 8e-137 71
W5S_1543 YP_006282507.1 Prophage P4 integrase VFG0626 Protein 7e-140 67
W5S_1543 YP_006282507.1 Prophage P4 integrase VFG1693 Protein 3e-137 67
W5S_1543 YP_006282507.1 Prophage P4 integrase VFG0783 Protein 1e-80 44
W5S_1543 YP_006282507.1 Prophage P4 integrase VFG0598 Protein 3e-80 44