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Name : W5S_1296 (W5S_1296) Accession : YP_006282268.1 Strain : Pectobacterium sp. SCC3193 Genome accession: NC_017845 Putative virulence/resistance : Virulence Product : General secretory pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 1424352 - 1425848 bp Length : 1497 bp Strand : + Note : - DNA sequence : ATGAGCGACGTTGCCTCTTCGATTATAGAATTACGTCCCATATTGCCTTTCGCGTATGCGCGATCGCAGCAAATTCTGCT GTTGCAGGGGGATAATGATGCAAGCCTTCAGACGATCTGTGTTGCGCAGACGCCAGCGGCAGCGCTGTTGGAGGCGCGTC GGGTTGCAGGCTGCCCGCTCAGGATTGAGCGGGTGACGGAAGACGAGTTTGAACGACAGTTAGTCATTAGCTATCAGCGC GATTCGGAAGAAGCGCGCCGTCTGATGGAGGACATCGGTAATGAGATGGACTTCTATACGTTGGTGGAAGAACTGCCAGA CAGTGATGATTTACTCGATGCCGATGATGACGCGCCGATTATCCGCCTCATCAATGCCATGTTAACCGAAGCGATTAAGA ATAAGGCGTCGGATATTCATATCGAAACCTATGAGCGTTATTTGCTGATCCGTTTCCGGGTTGACGGCGTATTGCGTGAG ATTTTGCGTCCACAGCGTAAGCTGGCTTCGCTGCTGGTGTCGCGTATCAAAGTCATGGCAAAGCTGGATATTGCGGAAAA GCGTATCCCGCAGGATGGGCGCATGGCGCTGAGGGTGGGAGGACGGGCGGTTGACGTGCGTGTCTCCACTCTGCCGTCGA ATTACGGTGAGCGTGTCGTGCTGCGTTTGCTGGATAAAAACAGCGTTAAGCTCGATCTTGAATTGCTGGGTATGTCGGAA CGCAATCGACAACTGCTGGACAGCCTGATCCATCGCCCACACGGTATTATTCTCGTCACCGGCCCGACGGGGTCGGGGAA AAGTACCACGCTTTATGCCGCGCTTAGCCGCCTGAATGCTTCGGAACGTAACATCATGACGGTGGAAGATCCCATCGAAT ATGAGCTGGAAGGCATCGGGCAAACGCAGGTCAATACCAAAGTGGACATGACGTTTGCCCGTGGGCTGCGCGCCATTTTG CGTCAGGATCCGGACGTGGTGCTGGTAGGGGAGGTTCGCGATGGTGAAACCGCGCAGATTGCCGTGCAGGCATCGCTGAC TGGCCACCTTGTACTCTCCACATTGCATACCAATAGTGCGCTGGGCGCGCTGTCTCGTTTGCAGGATATGGGTGTAGAAC CTTTCCTGCTATCAACCTCTTTGTTGGGCGTACTCGCACAGCGTCTGGTTAGAACGTTATGTTCTGACTGTAGTCAGCCG CAGCCTGTCGATCCGGTTCAGGCGAAACAGATGGGGATCGCGCCGGATACGCTGCTGCACAACCCCGTTGGCTGCCCGCA GTGTAGCTTCACCGGCTACCGCGGACGTATCGGCATTCATGAGCTGGTGTTGATCAATGACGATGTCCGCACGGCGATCC ACCGTAGTGAGGGGGAAATGGCGATTGCGCAGATTTTGGGGGAGAGCCGAACGACAATCCGTCAGGACGGGTTGGAGAAG GTACTGGCGGGGCTCACAACCTGGGAAGAAGTGATCCGCGTAACCAAAGAGGAATGA Protein sequence : MSDVASSIIELRPILPFAYARSQQILLLQGDNDASLQTICVAQTPAAALLEARRVAGCPLRIERVTEDEFERQLVISYQR DSEEARRLMEDIGNEMDFYTLVEELPDSDDLLDADDDAPIIRLINAMLTEAIKNKASDIHIETYERYLLIRFRVDGVLRE ILRPQRKLASLLVSRIKVMAKLDIAEKRIPQDGRMALRVGGRAVDVRVSTLPSNYGERVVLRLLDKNSVKLDLELLGMSE RNRQLLDSLIHRPHGIILVTGPTGSGKSTTLYAALSRLNASERNIMTVEDPIEYELEGIGQTQVNTKVDMTFARGLRAIL RQDPDVVLVGEVRDGETAQIAVQASLTGHLVLSTLHTNSALGALSRLQDMGVEPFLLSTSLLGVLAQRLVRTLCSDCSQP QPVDPVQAKQMGIAPDTLLHNPVGCPQCSFTGYRGRIGIHELVLINDDVRTAIHRSEGEMAIAQILGESRTTIRQDGLEK VLAGLTTWEEVIRVTKEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-135 | 63 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-135 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| W5S_1296 | YP_006282268.1 | General secretory pathway protein E | VFG2048 | Protein | 5e-136 | 62 |
| W5S_1296 | YP_006282268.1 | General secretory pathway protein E | VFG0182 | Protein | 2e-134 | 62 |
| W5S_1296 | YP_006282268.1 | General secretory pathway protein E | VFG1876 | Protein | 6e-124 | 56 |
| W5S_1296 | YP_006282268.1 | General secretory pathway protein E | VFG2426 | Protein | 6e-73 | 46 |
