Gene Information

Name : W5S_1285 (W5S_1285)
Accession : YP_006282258.1
Strain : Pectobacterium sp. SCC3193
Genome accession: NC_017845
Putative virulence/resistance : Unknown
Product : Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1409607 - 1410821 bp
Length : 1215 bp
Strand : -
Note : -

DNA sequence :
ATGCCACTTAATGCTCGACAGATAGAAACCGCCAAGCCACAAGACACAGAGTACAAACTCACTGACGGCGCAGGCCTTTA
TCTTCTGATAAAGCCGAATGGAGCCAAATATTGGCGCTTGAAGTACCGCGTTGCAGGTAAAGAGAAAAAATTATCTATCG
GTGTTTATCCTGATATCTCGCTGGCAGAGGCTCGCCTAAAACGCGAAGAAGCTCGCAAAATCGTCGCTTCTGGTGGCGAT
CCTAGTGAACAAAAGCAGGTCGAAAGACAGGCTAAGAAAATCAGCATTGATAACACCTTCAAAGCTATCGCTCTCGAATG
GCATGAATATAAGCGCCCTAACTGGTCAAAGGGATACGCTGAAGACCTGATGGAAGCGTTTGAGAATGACATCTTCCCTG
ATATCGGCAAACGCCCTATTGCTGAGATTAAGCCGCTGGAAATGCTAACCTCACTGCGCAAACTTGAAAAACGTGGCGTA
CTCGACAAGTTGCGTAAGATTCGCCAAGCCTGTAATCAGGTGTTCCGTTATGCGATTGTCACTGGGCGGGCGGAAAACAA
CCCAGCGTCAGAACTGGCAAGTGCCCTTCCGCCCCCCAAGGCCACGCACTACCCTCACCTGTTGCCTGATGAACTACCGG
ATTTTCTACGCGCGTTATCAACGTATTCGGGGAGTAAGGTCACACAACTGGCAACACGTATCCTGATGCTTACCGGCGTT
CGCACTATCGAGTTACGACAAGCAGAATGGAAGGAGTTTGATTTTGAAAAAGGGCTCTGGGAAGTACCGAAAGAACGCAT
GAAAATGCGTCGCCCCCACCTCGTTCCCCTCTCCGATCAAGTGATCGATGCGCTGCAACAACTCCGCGCCGTTACCGGAC
GCTACAATCTGGTTTTCCCTGGACGTAACGACATCACCAAGCCGATGAGTGAAGCCAGTATTAATCAGGTACTGAAACGA
ATTGGTTATCACGGTAAAGCAACAGGCCACGGCTTTCGCCACACGATGAGTACCATACTGCACGAACAAGGCTATAACAC
CGCCTGGATCGAATTGCAGCTTGCTCATGTGGATAAGAACACCATTCGTGGCACTTATAACCATGCGCAGTATTTGGAAC
AACGTAGGGGTATGTTGCAGTGGTATGGGGATTTTATTGATGGGCTGGAGCATGGGGATGTGAAGAAGGTTGTGGTGATG
GGGAAACGGAAGTAG

Protein sequence :
MPLNARQIETAKPQDTEYKLTDGAGLYLLIKPNGAKYWRLKYRVAGKEKKLSIGVYPDISLAEARLKREEARKIVASGGD
PSEQKQVERQAKKISIDNTFKAIALEWHEYKRPNWSKGYAEDLMEAFENDIFPDIGKRPIAEIKPLEMLTSLRKLEKRGV
LDKLRKIRQACNQVFRYAIVTGRAENNPASELASALPPPKATHYPHLLPDELPDFLRALSTYSGSKVTQLATRILMLTGV
RTIELRQAEWKEFDFEKGLWEVPKERMKMRRPHLVPLSDQVIDALQQLRAVTGRYNLVFPGRNDITKPMSEASINQVLKR
IGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKNTIRGTYNHAQYLEQRRGMLQWYGDFIDGLEHGDVKKVVVM
GKRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-133 67
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-121 63
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-121 63
int ACU09430.1 integrase Not tested LEE Protein 3e-121 63
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-121 63
int CAC39282.1 integrase Not tested LPA Protein 2e-121 63
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-121 63
int AAD44730.1 Int Not tested SHI-2 Protein 4e-120 63
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 5e-120 63
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-120 63
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-120 63
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-122 62
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 2e-71 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 2e-71 43
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 8e-68 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-71 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
W5S_1285 YP_006282258.1 Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage VFG0783 Protein 2e-121 63
W5S_1285 YP_006282258.1 Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage VFG0598 Protein 3e-120 63