Gene Information

Name : BP1026B_II1727 (BP1026B_II1727)
Accession : YP_006278358.1
Strain :
Genome accession: NC_017832
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctS
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2161572 - 2161835 bp
Length : 264 bp
Strand : -
Note : -

DNA sequence :

ATGGAAATCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTGTGTCTCTACATCTCGCTGCCGGTCGTGCTCGT
CGCGGCCGCCTCCGGCCTGGCGATCTCGTTCCTGCAGGCGATCACGTCGCTGCAGGAGCAGAGCATCTCGTACGGCGTGA
AGCTCGTCGCGGTGACGGTGACCGTCGCGATCGCCGGGCCGTGGGCGGCCGCCGAGATCCTGCATTTCGCGCAGCAACTG
ATGTCCGCGGCGGTGCCGTCGTGA

Protein sequence :

MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
hrcS	YP_362152.1	HrcS protein	Virulence	Hrp PAI	Protein	1e-16	54
hrcS	YP_198719.1	hypothetical protein	Virulence	Hrp PAI	Protein	1e-16	54
hrcS	NP_640756.1	HrcS protein	Virulence	Hrp PAI	Protein	1e-16	54
hrcS	AAD21322.1	HrcS	Virulence	Hrp PAI	Protein	1e-16	54
hrcS	BAB07863.1	HrcS	Virulence	Hrp PAI	Protein	9e-17	54
hrcS	AAP34350.1	HrcS	Virulence	Hrp PAI	Protein	9e-17	54
XC_3017	YP_244085.1	HrcS protein	Virulence	Hrp PAI	Protein	1e-14	53
hrcS	NP_636599.1	HrcS protein	Virulence	Hrp PAI	Protein	1e-14	53
lscS	AAO18039.1	LscS	Virulence	TTSS locus	Protein	4e-09	42
hrcS	AAB06006.1	HrcS	Virulence	Hrp PAI	Protein	3e-11	42

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
BP1026B_II1727	YP_006278358.1	type III secretion inner membrane protein SctS	VFG0395	Protein	1e-09	43
BP1026B_II1727	YP_006278358.1	type III secretion inner membrane protein SctS	VFG0043	Protein	2e-10	43
BP1026B_II1727	YP_006278358.1	type III secretion inner membrane protein SctS	VFG0187	Protein	1e-04	42