Gene Information

Name : bicA (BP1026B_II1629)
Accession : YP_006278263.1
Strain :
Genome accession: NC_017832
Putative virulence/resistance : Virulence
Product : type III secretion low calcium response chaperone LcrH/SycD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2057446 - 2057961 bp
Length : 516 bp
Strand : -
Note : -

DNA sequence :
ATGACGCAACGCGACGTGAACATAGACGACATCGAGGCGCAGGAAATGGCGGCGGCGCTGCTGGACGCGGTCCAGAACGG
CGCGACGCTGAAGGACCTGCATCAGGTGCCGCAGGACCTGATGGACGGCATCTATGCGTTCGCGTACCGCTTCTACCAGC
AGGGGCGGCTCGACGACGCGGAGGTGTTCTTCCGCTTTCTGTGCATCTACGACTTCTACAACGCCGAATACGCGATGGGG
CTCGCGGCGGTGTGCCAGTTGAAGAAGGAGTACGCGCGGGCGATCGATCTGTATGCACTCGCGTATTCGCTGTCGAAGGA
CGACCACCGGCCGATGTTCCACACCGGCCAATGCCATCTGCTGATGGGCAAGGCGGCGCTCGCGCGGCGCTGCTTCGGCA
TCGTCGCCGAGCGCTCGCGCGACGAGCGCCTCGCGCAGAAGGCGCAGTCCTATCTCGACGGGCTCGACGAAGTGGGCGCC
GATGCGGCGCCCGCATCCGCCGGGAACGACCACTAG

Protein sequence :
MTQRDVNIDDIEAQEMAAALLDAVQNGATLKDLHQVPQDLMDGIYAFAYRFYQQGRLDDAEVFFRFLCIYDFYNAEYAMG
LAAVCQLKKEYARAIDLYALAYSLSKDDHRPMFHTGQCHLLMGKAALARRCFGIVAERSRDERLAQKAQSYLDGLDEVGA
DAAPASAGNDH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sycB AAS66850.1 SycB Not tested SSR-1 Protein 2e-37 62
sicA YP_217805.1 surface presentation of antigens; secretory proteins Virulence SPI-1 Protein 1e-45 60
spaT NP_457280.1 unknown function Virulence SPI-1 Protein 1e-45 60
spaT NP_806489.1 hypothetical protein Virulence SPI-1 Protein 1e-45 60
sicA NP_461807.1 secretion chaperone Virulence SPI-1 Protein 1e-45 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
bicA YP_006278263.1 type III secretion low calcium response chaperone LcrH/SycD VFG2451 Protein 4e-76 99
bicA YP_006278263.1 type III secretion low calcium response chaperone LcrH/SycD VFG0547 Protein 4e-46 60
bicA YP_006278263.1 type III secretion low calcium response chaperone LcrH/SycD VFG0988 Protein 1e-43 51
bicA YP_006278263.1 type III secretion low calcium response chaperone LcrH/SycD VFG1769 Protein 2e-38 47