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Name : sctR (BP1026B_II1496) Accession : YP_006278135.1 Strain : Genome accession: NC_017832 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : - COG ID : - EC number : - Position : 1889842 - 1890555 bp Length : 714 bp Strand : + Note : - DNA sequence : ATGGGGAGCTCGTGGCTGTTGGCGAGCATCTCGGCGTTCGCATCATTCGAATGGCTCATCGACATGGTACAGTTCAGTGA CATCACCGGGCTGCTGCTCGTTGTCATCGCAATCAGCTTGTTGCCGTTCATTGCGATGGTCGTGACGTCGTATGCGAAGA TCGTCGTCGTGCTGGGGCTTCTGCGCAACGCGCTCGGCGTGCAACAGGTTCCGCCCAATATGGTTCTCAACGGGATCGCG ATTCTGGTATCGCTCTACGTGATGGCACCTATCGGCATGCAGGCGGCGAAGGCGCTCGACGAACAACAGCTCGCCTCGCA GTCCTCCCAGGCCATCATCCAAGCGCTCGGTTCAGCACGCGAACCGTTCCGATCGTTTCTCGAGAAACACACTCCCGAAC GCGAAAAACGCTTCTTTATTCGTTCCGCTTCCGTCATCTGGCCGAAGGAAGAAGCATCGCTTCTGAACGAGCGCGACCTC ATCGTTCTCGCACCGGCGTTCGCGCTATCGGAGTTGACCGACGCGTTCAAGATCGGCTTTCTGCTGTACATCGTGTTCAT CATCGTCGATCTGGTGATCGCCAATGTGCTCCTGGCGCTGGGGCTCAACCAGATCACGCCGACCAACGTCGCCATACCAT TCAAGCTGCTGCTGTTCGTTGCCATGGACGGTTGGTCCACGCTCATCCACGGCCTGGTCATGACTTACAAATGA Protein sequence : MGSSWLLASISAFASFEWLIDMVQFSDITGLLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIA ILVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNERDL IVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLLLFVAMDGWSTLIHGLVMTYK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcR | BAB07862.1 | HrcR | Virulence | Hrp PAI | Protein | 3e-63 | 70 |
| hrcR | AAP34349.1 | HrcR | Virulence | Hrp PAI | Protein | 1e-62 | 69 |
| hrcR | YP_198720.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-67 | 69 |
| XC_3016 | YP_244084.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-65 | 68 |
| hrcR | NP_636600.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 1e-65 | 68 |
| hrcR | NP_640757.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-66 | 68 |
| hrcR | AAD21321.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-66 | 68 |
| hrcR | YP_362153.1 | type III secretion system protein | Virulence | Hrp PAI | Protein | 3e-66 | 68 |
| lscR | AAO18040.1 | LscR | Virulence | TTSS locus | Protein | 4e-42 | 47 |
| hrcR | AAB06005.2 | HrcR | Virulence | Hrp PAI | Protein | 5e-34 | 42 |
| hrcR | ABQ88359.1 | HrcR | Virulence | Hrp PAI | Protein | 2e-28 | 41 |
| hrpW | AAB05075.1 | HrpW | Virulence | Hrp PAI | Protein | 2e-28 | 41 |
| escR | YP_003232138.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-37 | 41 |
| escR | AAC31528.1 | L0049 | Virulence | LEE | Protein | 4e-37 | 41 |
| escR | ACU09473.1 | type III secretion system protein EscR | Virulence | LEE | Protein | 4e-37 | 41 |
| ECs4583 | NP_312610.1 | type III secretion system protein | Virulence | LEE | Protein | 1e-36 | 41 |
| escR | AAK26700.1 | EscR | Virulence | LEE | Protein | 3e-37 | 41 |
| escR | YP_003236103.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-37 | 41 |
| escR | AAL57527.1 | EscR | Virulence | LEE | Protein | 3e-37 | 41 |
| escR | NP_290283.1 | type III secretion system protein | Virulence | LEE | Protein | 5e-37 | 41 |
| escR | CAC81847.1 | EscR protein | Virulence | LEE II | Protein | 3e-37 | 41 |
| escR | YP_003223490.1 | T3SS structure protein EscR | Virulence | LEE | Protein | 5e-37 | 41 |
| escR | CAI43889.1 | EscR protein | Virulence | LEE | Protein | 3e-37 | 41 |
| unnamed | AAL06354.1 | EscR | Virulence | LEE | Protein | 3e-35 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sctR | YP_006278135.1 | type III secretion system protein | VFG0188 | Protein | 1e-45 | 48 |
| sctR | YP_006278135.1 | type III secretion system protein | VFG0394 | Protein | 2e-44 | 47 |
| sctR | YP_006278135.1 | type III secretion system protein | VFG0044 | Protein | 1e-40 | 44 |
| sctR | YP_006278135.1 | type III secretion system protein | VFG1012 | Protein | 3e-32 | 43 |
| sctR | YP_006278135.1 | type III secretion system protein | VFG0827 | Protein | 2e-37 | 41 |
