Gene Information

Name : sctV (BP1026B_II1493)
Accession : YP_006278132.1
Strain :
Genome accession: NC_017832
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1885820 - 1887937 bp
Length : 2118 bp
Strand : +
Note : -

DNA sequence : 
ATGTTCAAATCGCTGAAACTGCCCGCGGGCGGTGAAATCGGAATCGTCGCCCTGGTCATCGCGATCATCTCGCTGATGAT
ACTGCCGCTGCCGCCAGTCGCGATCGACCTGCTGCTGGGCATCAACATCACCATCAGCGTGACGCTGCTGATGGTGACGA
TGTACGTTCCGGATATCGCCGCGCTATCCGCGTTTCCGTCGCTCCTGCTGTTCACGACGCTGTTCCGGCTGTCGCTCAAC
ATCGCGTCCACCAAGTCGATCCTGCTGCATGCGGAAGCGGGCAACATTATCGAGAGCTTTGGCCAGCTGGTGGTGGGCGG
CAACCTCGTCGTGGGCCTGGTCGTATTCGCCATCATCACGACCGTGCAATTCATCGTGATCGCGAAAGGCTCCGAGCGTG
TTGCGGAAGTCGGCGCCCGCTTCACGCTGGATGCGCTTCCGGGCAAGCAGATGAGCATCGACGCCGATTTGCGCTCCGGC
CTGCTGAGCACCGAGGAGGCACGGAAGAAGCGCGCGACGCTGGCGGTCGAAAGCCAGTTGCACGGCGGGATGGATGGCGC
GATGAAATTCGTCAAGGGCGACGCGATCGCCGGTCTCATCATCACGATGATCAACATCGTCGCGGGCATTGCGGTCGGCG
TTGCATATCACGGAATGTCGGCGGGCGACGCGGCAAACCGCTTCTCCGTATTGTCCGTCGGCGACGCGATGGTGTCGCAG
ATTCCGTCCCTGTTGCTCTCCGTCGCGGCAGGCGTGATGATCACGCGCGTCACCGACGAGCGCGCGCCGAAGCGGCGCTC
GCTCGGCGATGAAATCAGCCACCAGCTCGGCTCGAGCGCGCGTGCATTGTATTTCGCAGCGTTTCTTCTGCTCGGCTTCG
CCGCCGTGCCGGGCTTCCCCGCGGCGCTGTTCGTGCTGCTTGCCGCCGCGCTCGCGTTCGCCGGCTATCGACTGTCACGA
AAGGGTTCGCCATCGTCCGGCGCCGCTCGCGGACAAGAGCAGGAGGCGCTGCGTGCGATGCAGCGTTCGGGCGCCAAGGC
GGACGTCCCTCCGATCCTGCCGCGCGCGCCTCAGTTCGCTTGCGCCGTCGGCGTTCGGATCGCGCCGGATCTCGCGTCCG
GTCTTGCGTTGCCGAGGCTCGACGAAGCGCTCGACCTCGAGCGTGCACGCCTGCAGGACGAACTCGGGCTTCCTTTTCCC
GGCGTGACGATGTGGATTCATCCGACGCTCTCGGCAGCAACCTTCGAAGTGCTGATCCACGACGTGCCGCATCTTTCCGT
CACGCTTCCGGCTCGCAAGGCGATGCTGCCGCAGCAAAGGCATCTGTCGCCCGCTCACGCCGCGCTGACGGACGAGCAAA
AGGCGCGGCACCGGGATTTGATCGAACGGAGCGAAGCCGGCCCGCCGATCGACGCAAGCGGCCAAGCGACCCACTGGATC
GACGAGCCGGCGGTCACCGCGAAGGACAGCGTATGGCGCGCAGAACAGATCATCGCGTACGCATCCGTGGCGGCGATCCG
CACTCACGCACCGCTTTTTGTCGGCATCCAGGAAGTGCAGTGGATACTCGATCAGTTGGGCGCCGACTCCCCGGGCCTCG
TCGCCGAAGTGCTGAAGATCTTGCCGTCGACGCGCATTGCCGATGTGCTACGCCGCCTGCTTGAAGAGCAGATATCGATC
CGCAACGTGCGAACGATCATGGAAAGTCTGGTCGCATGGGGCGCGAAGGAGAAAGACATGCTGATGTTGACCGAATACGT
GCGCGGCGACCTGTCGCGCTTTCTCGCCCATCGAGCCGCGCAAGGCGAACGCGTGTTGTCCGCGGTCCTGTTCGACCTGC
AGGCGGAACAGCACATCCGCCAGGCGATCAAGCAAACGCCGACAGGCAATTTCCTCGCACTGCCCCCGGACGACGCATCG
CGGCTTGTCGATCGCATTCAGTCGCTCGTCGGCGCGAACGCCCGCACGGACATCGCGCTCGTCACCTCGATGGACATTCG
CCGCTATGTACGACGAATGATCGAGCGACGCATCGACTGGCTAGCCGTGTACTCGTATCAAGAGCTCGGCGAACACGTCG
AGCTGCGTCCGGTCGGCCGCGTGTCGCTCCAGGGTTGA

Protein sequence : 
MFKSLKLPAGGEIGIVALVIAIISLMILPLPPVAIDLLLGINITISVTLLMVTMYVPDIAALSAFPSLLLFTTLFRLSLN
IASTKSILLHAEAGNIIESFGQLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRSG
LLSTEEARKKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINIVAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ
IPSLLLSVAAGVMITRVTDERAPKRRSLGDEISHQLGSSARALYFAAFLLLGFAAVPGFPAALFVLLAAALAFAGYRLSR
KGSPSSGAARGQEQEALRAMQRSGAKADVPPILPRAPQFACAVGVRIAPDLASGLALPRLDEALDLERARLQDELGLPFP
GVTMWIHPTLSAATFEVLIHDVPHLSVTLPARKAMLPQQRHLSPAHAALTDEQKARHRDLIERSEAGPPIDASGQATHWI
DEPAVTAKDSVWRAEQIIAYASVAAIRTHAPLFVGIQEVQWILDQLGADSPGLVAEVLKILPSTRIADVLRRLLEEQISI
RNVRTIMESLVAWGAKEKDMLMLTEYVRGDLSRFLAHRAAQGERVLSAVLFDLQAEQHIRQAIKQTPTGNFLALPPDDAS
RLVDRIQSLVGANARTDIALVTSMDIRRYVRRMIERRIDWLAVYSYQELGEHVELRPVGRVSLQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcV AAP34346.1 HrcV Virulence Hrp PAI Protein 1e-135 57
XC_3013 YP_244081.1 HrcV protein Virulence Hrp PAI Protein 7e-134 57
hrcV NP_636603.1 protein HrcV Virulence Hrp PAI Protein 7e-134 57
hrcV YP_362156.1 HrcV protein Virulence Hrp PAI Protein 3e-135 57
hrcV BAB07859.1 HrcV Virulence Hrp PAI Protein 1e-131 57
hrcV YP_198723.1 protein HrcV Virulence Hrp PAI Protein 2e-131 57
hrcV NP_640760.1 HrcV protein Virulence Hrp PAI Protein 1e-135 57
lssD AAO18050.1 LssD Virulence TTSS locus Protein 2e-106 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctV YP_006278132.1 type III secretion protein VFG0064 Protein 2e-104 42