Gene Information

Name : DGo_CA0545 (DGo_CA0545)
Accession : YP_006259930.1
Strain : Deinococcus gobiensis I-0
Genome accession: NC_017790
Putative virulence/resistance : Resistance
Product : Tetracycline-efflux transporter
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 567306 - 568541 bp
Length : 1236 bp
Strand : +
Note : -

DNA sequence : 
ATGCGTCAGAAACCCGCGGCTCTGATCTTCATCCTTCTGACGGTCCTCATCGACGTGATGGGCATCGGGCTGATCATCCC
GGTGTTGCCGGGGCTGGTCAAGGAGCTGGCGGGGTCGGCCGAGGCGGGCGCGCGCGACATCGGCTGGCTCACGGCCGCCT
ACGCGCTGATGCAGTTCGTCTTCGCGCCCATCCTGGGCTCCCTGAGTGACCGCTTCGGGCGGCGGCCGGTACTGCTGGTG
TCGTTGCTGGGCATGGCGCTCGACTACCTGCTGCTGTTCTTCGCGCCCAGCCTCGCGTGGCTGTTCGTCGGGCGGGTGCT
CGCCGGCATCACGGGGGCGAGCCTCACGGTCGCCAACGCCTACGTCGCCGACGTGACGGCCCCCGAGCAGCGCGCCAAAA
GTTTCGGGCTGCTGGGCGCCACCTTCGGGGTGGGGTTCATCCTGGGGCCGGCGCTGGGCGGGCTGCTGGGCGAGTACGGC
CTGCGCGTGCCCTTCCTGGTCGCGGCGGGCCTGACGCTGCTCAATTTCCTCTACGGCCTGTTCGTGCTGCCCGAGTCGCG
CCCGGCGTCGGCCCGGACACGCTCACTCGACCCGCGCGCCCTGAACCCCTTCACGCCGCTGCGCGCCCTGGCCGAGTACA
CCATCACCCGCAACCTCGCCCTGACCTTCGTGCTGCTGGGGCTGGCCGGTCAGGTCATCTACAGCACCTGGGTCCTGTAC
ACCGAGGGCGTGCTGCGCTGGACCCCGGCCCAGAACGGCGTGGCGCTGGCCTTTTTCGGGCTGCTCACGGCGGGCGTGCA
GGCGGGGCTCATCGGGCGCTTCATCACCCGCTTCGGCGAGCGCCGCACCATCATGATCGGCCTGATCGCCTCGCTGGGCG
AGTTCCTGGTCCTGAGCGTGGCGCGCACCGGCGGCCTGCTGTACCTCTCGCTGGTGGTCGGGGCGCTGGGGGGGCTGGCG
CAGCCCGCCATCCAGGGCCTCGTGTCGCGCCAGGTCAGCGAGGACGAGCAGGGCCGCGTGCAGGGCGCCATCACCAGCCT
GAACAGCCTCGTGGGCGTGGTGGGGCCGCTGCTGGCGACCACGGTCTTCGCCTATTTCACGGGCGACCGCGCGCCGGTCC
ACTTTCCCGGCGCCGCCTTTCTGATGGGCGCGCTGTTCTCGGCGCTGGGAGCGGGGCTGGTCTGGACCGTCCTGCGCCGC
CTGCCGGCCGAGAAGTCCGCCGAAGCGCCGGTCTGA

Protein sequence : 
MRQKPAALIFILLTVLIDVMGIGLIIPVLPGLVKELAGSAEAGARDIGWLTAAYALMQFVFAPILGSLSDRFGRRPVLLV
SLLGMALDYLLLFFAPSLAWLFVGRVLAGITGASLTVANAYVADVTAPEQRAKSFGLLGATFGVGFILGPALGGLLGEYG
LRVPFLVAAGLTLLNFLYGLFVLPESRPASARTRSLDPRALNPFTPLRALAEYTITRNLALTFVLLGLAGQVIYSTWVLY
TEGVLRWTPAQNGVALAFFGLLTAGVQAGLIGRFITRFGERRTIMIGLIASLGEFLVLSVARTGGLLYLSLVVGALGGLA
QPAIQGLVSRQVSEDEQGRVQGAITSLNSLVGVVGPLLATTVFAYFTGDRAPVHFPGAAFLMGALFSALGAGLVWTVLRR
LPAEKSAEAPV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 3e-60 47
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 2e-60 47
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 2e-60 47
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 2e-60 47
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 2e-60 47
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 2e-60 47
tetA(B) AAL08445.1 tetracycline resistance protein TetA(B) Not tested SRL Protein 4e-50 42
tetB AEA34667.1 tetracycline resistance determinant Not tested Not named Protein 3e-50 42
tetA(B) AEZ06045.1 tetracycline efflux protein Not tested Tn6167 Protein 5e-50 42
BJAB07104_00277 YP_008207742.1 Permeases of the major facilitator superfamily Not tested AbaR25 Protein 5e-50 42
BJAB0868_00281 YP_008211607.1 Permeases of the major facilitator superfamily Not tested AbaR26 Protein 5e-50 42
tetA(B) AEQ20905.1 tetracycline resistance protein Not tested Tn6166 Protein 5e-50 42
ABZJ_00260 YP_005524216.1 Tetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter) Not tested AbaR22 Protein 3e-50 42
tetA(B) AFH57202.1 tetracycline resistance protein Not tested AbaR4a Protein 4e-50 42
tet(G) AAK02051.1 tetracycline resistance protein Not tested SGI1 Protein 1e-45 41
tetA(G) ABZ01843.1 TetA(G) Not tested SGI2 Protein 1e-45 41
tetA(G) AGK06974.1 TetA(G) Not tested SGI1 Protein 1e-45 41
tetA(G) AGK07104.1 TetA(G) Not tested SGI1 Protein 1e-45 41
tetA CAJ77034.1 Tetracycline resistance protein Not tested AbaR1 Protein 3e-47 41
tetA YP_005797160.1 tetracycline resistance protein, class G (TETA(G)) Not tested AbaR4e Protein 7e-50 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AY264780.2.gene3.p01 Protein 2e-69 50
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter CP001485.1.gene2821. Protein 1e-60 47
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AF534183.gene.p01 Protein 1e-60 47
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_010410.6002597.p0 Protein 1e-60 47
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter Y19114.gene.p01 Protein 8e-59 46
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter X75761.gene.p01 Protein 6e-60 46
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AF090987.gene.p01 Protein 2e-54 46
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_011586.7045189.p0 Protein 5e-56 46
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AY743590.gene.p01 Protein 1e-59 45
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_011595.7059241.p0 Protein 3e-48 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AF121000.gene.p01 Protein 5e-56 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AJ420072.gene.p01 Protein 3e-56 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter V00611.gene.p01 Protein 4e-50 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AB084246.gene.p01 Protein 9e-51 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_010558.1.6275971. Protein 2e-50 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_009085.4918440.p0 Protein 3e-48 42
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_011586.7043399.p0 Protein 3e-48 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_010410.6002612.p0 Protein 2e-47 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AF133140.gene.p01 Protein 2e-47 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter CP004022.1.gene2534. Protein 1e-53 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter AF038993.gene.p01 Protein 3e-54 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter L06798.gene.p01 Protein 1e-42 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter NC_010410.6003291.p0 Protein 4e-48 41
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter Y19116.gene.p01 Protein 1e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DGo_CA0545 YP_006259930.1 Tetracycline-efflux transporter VFG1036 Protein 2e-50 42